Difference between revisions of "Team H(oo)KD Week 13 Status Report"
From LMU BioDB 2013
(→Reflection: Added Categories to Week 13 Status Report team page) |
(→Status Report: Added links to master spreadsheet and project notebook on homepage) |
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*Determined 4 replicates based on article and data. | *Determined 4 replicates based on article and data. | ||
Create a Master Raw Data file that contains the IDs and columns of data required for further analysis. | Create a Master Raw Data file that contains the IDs and columns of data required for further analysis. | ||
| − | *Created Master Spreadsheet and uploaded it to team wiki. | + | *Created [[Media: Master Spreadsheet.xls|Master Spreadsheet]] and uploaded it to team wiki. |
Consult with Dr. Dahlquist on how to process the data (normalization, statistics). | Consult with Dr. Dahlquist on how to process the data (normalization, statistics). | ||
| − | *Consulted with Dr. Dahlquist on how to process data and recorded steps in | + | *Consulted with Dr. Dahlquist on how to process data and recorded steps in [[Dwilliams Project Notebook|Project Notebook]]. |
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===Reflection=== | ===Reflection=== | ||
# What were the week’s key accomplishments? | # What were the week’s key accomplishments? | ||
Revision as of 05:34, 22 November 2013
| Project Manager/Coder: Katrina Sherbina | Quality Assurance: Hilda Delgadillo | GenMAPP User: Dillon Williams |
| Project Guidelines: | Gene Database Project | Report Guidelines | |
| Team Journal Assignments | Week 12 Status Report | Week 13 Status Report | Week 15 Status Report |
| Individual Status Reports: | HDelgadi Project Notebook | dwilliams Project Notebook | Ksherbina Project Notebook |
| Useful Links: | Class Page | Team Home Page |
| Final Product | Project Deliverables |
Contents |
Coder Status Update
Reflection
Quality Assurance Status Update
Reflection
GenMAPP User Status Update
Status Report
Milestone 2 Read the microarray paper to understand the experiment.
- Read Microarray Paper to understand experiment and find relations between raw data and article.
Create a table or list that shows the correspondence between the samples in the experiment and the files you have downloaded.
- Downloaded sdrf file and opened in excel to determine list that shows correspondence between samples in experiment and raw data file downloaded.
Determine how many biological or technical replicates, and which samples were labeled with Cy3 or Cy5.
- Determined 4 replicates based on article and data.
Create a Master Raw Data file that contains the IDs and columns of data required for further analysis.
- Created Master Spreadsheet and uploaded it to team wiki.
Consult with Dr. Dahlquist on how to process the data (normalization, statistics).
- Consulted with Dr. Dahlquist on how to process data and recorded steps in Project Notebook.
Reflection
- What were the week’s key accomplishments?
- The key accomplishments (for my position in the group) were understanding how to run the dChip software and convert and collect the raw data used into a workable format.
- What are next week’s target accomplishments?
- By next week we would like to perform GenMAPP and MAPPFinder analysis of the data.
- What team strengths were seen this week?
- Every member on our team accomplishes their role in an efficient and effective manner. If one member needs help with their role, the others are more than willing to help.
- What team weaknesses were seen this week?
- The Affymetrix data and use of the dChip software were confusing at first, but easily resolved once Dr. Dahlquist was consulted.
