Difference between revisions of "Laurmagee: Week 15"

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(→‎Sanity Check)
(→‎Sanity Check)
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#*36 genes
 
#*36 genes
 
#Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change greater than zero. How many are there for the time set of 15 minutes?
 
#Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change greater than zero. How many are there for the time set of 15 minutes?
−
#*1521
+
#*1521 genes
 
#Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change greater than zero. How many are there for the time set of 30 minutes?
 
#Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change greater than zero. How many are there for the time set of 30 minutes?
−
#*1926
+
#*1926 genes
 
#Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change greater than zero. How many are there for the time set of 60 minutes?
 
#Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change greater than zero. How many are there for the time set of 60 minutes?
−
#*2194
+
#*2194 genes
 
#Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change greater than zero. How many are there for the time set of 240 minutes?
 
#Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change greater than zero. How many are there for the time set of 240 minutes?
−
#*2846
+
#*2846 genes
 
#Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change less than zero. How many are there for the time set of 15 minutes?
 
#Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change less than zero. How many are there for the time set of 15 minutes?
−
#*2092
+
#*2092 genes
 
#Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change less than zero. How many are there for the time set of 30 minutes?
 
#Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change less than zero. How many are there for the time set of 30 minutes?
−
#*3299
+
#*3299 genes
 
#Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change less than zero. How many are there for the time set of 60 minutes?
 
#Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change less than zero. How many are there for the time set of 60 minutes?
−
#*3013
+
#*3013 genes
 
#Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change less than zero. How many are there for the time set of 240 minutes?
 
#Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change less than zero. How many are there for the time set of 240 minutes?
−
#*3944
+
#*3944 genes
 
#What about an average log fold change of > 0.25 and p < 0.05 for the time set of 15 minutes?
 
#What about an average log fold change of > 0.25 and p < 0.05 for the time set of 15 minutes?
−
#*1476
+
#*1476 genes
 
#What about an average log fold change of > 0.25 and p < 0.05 for the time set of 30 minutes?
 
#What about an average log fold change of > 0.25 and p < 0.05 for the time set of 30 minutes?
−
#*1890
+
#*1890 genes
 
#What about an average log fold change of > 0.25 and p < 0.05 for the time set of 60 minutes?
 
#What about an average log fold change of > 0.25 and p < 0.05 for the time set of 60 minutes?
−
#*2129
+
#*2129 genes
 
#What about an average log fold change of > 0.25 and p < 0.05 for the time set of 240 minutes?
 
#What about an average log fold change of > 0.25 and p < 0.05 for the time set of 240 minutes?
−
#*2763
+
#*2763 genes
 
#Or an average log fold change of < -0.25 and p < 0.05 for the time set of 15 minutes?
 
#Or an average log fold change of < -0.25 and p < 0.05 for the time set of 15 minutes?
−
#*2052
+
#*2052 genes
 
#Or an average log fold change of < -0.25 and p < 0.05 for the time set of 30 minutes?
 
#Or an average log fold change of < -0.25 and p < 0.05 for the time set of 30 minutes?
−
#*3256
+
#*3256 genes
 
#Or an average log fold change of < -0.25 and p < 0.05 for the time set of 60 minutes?
 
#Or an average log fold change of < -0.25 and p < 0.05 for the time set of 60 minutes?
−
#*2942
+
#*2942 genes
 
#Or an average log fold change of < -0.25 and p < 0.05 for the time set of 240 minutes?
 
#Or an average log fold change of < -0.25 and p < 0.05 for the time set of 240 minutes?
−
#*3866
+
#*3866 genes

Revision as of 18:46, 3 December 2013

Sanity Check

  1. How many genes have p value < 0.05 for the time set of 15 minutes?
    • 3613 genes
  2. How many genes have p value < 0.05 for the time set of 30 minutes?
    • 5225 genes
  3. How many genes have p value < 0.05 for the time set of 60 minutes?
    • 5207 genes
  4. How many genes have p value < 0.05 for the time set of 240 minutes?
    • 6790 genes
  5. How many genes have p value < 0.01 for the time set of 15 minutes?
    • 907 genes
  6. How many genes have p value < 0.01 for the time set of 30 minutes?
    • 1518 genes
  7. How many genes have p value < 0.01 for the time set of 60 minutes?
    • 1553 genes
  8. How many genes have p value < 0.01 for the time set of 240 minutes?
    • 2437 genes
  9. How many genes have p value < 0.001 for the time set of 15 minutes?
    • 92 genes
  10. How many genes have p value < 0.001 for the time set of 30 minutes?
    • 179 genes
  11. How many genes have p value < 0.001 for the time set of 60 minutes?
    • 172 genes
  12. How many genes have p value < 0.001 for the time set of 240 minutes?
    • 347 genes
  13. How many genes have p value < 0.0001 for the time set of 15 minutes?
    • 7 genes
  14. How many genes have p value < 0.0001 for the time set of 30 minutes?
    • 15 genes
  15. How many genes have p value < 0.0001 for the time set of 60 minutes?
    • 13 genes
  16. How many genes have p value < 0.0001 for the time set of 240 minutes?
    • 36 genes
  17. Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change greater than zero. How many are there for the time set of 15 minutes?
    • 1521 genes
  18. Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change greater than zero. How many are there for the time set of 30 minutes?
    • 1926 genes
  19. Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change greater than zero. How many are there for the time set of 60 minutes?
    • 2194 genes
  20. Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change greater than zero. How many are there for the time set of 240 minutes?
    • 2846 genes
  21. Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change less than zero. How many are there for the time set of 15 minutes?
    • 2092 genes
  22. Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change less than zero. How many are there for the time set of 30 minutes?
    • 3299 genes
  23. Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change less than zero. How many are there for the time set of 60 minutes?
    • 3013 genes
  24. Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change less than zero. How many are there for the time set of 240 minutes?
    • 3944 genes
  25. What about an average log fold change of > 0.25 and p < 0.05 for the time set of 15 minutes?
    • 1476 genes
  26. What about an average log fold change of > 0.25 and p < 0.05 for the time set of 30 minutes?
    • 1890 genes
  27. What about an average log fold change of > 0.25 and p < 0.05 for the time set of 60 minutes?
    • 2129 genes
  28. What about an average log fold change of > 0.25 and p < 0.05 for the time set of 240 minutes?
    • 2763 genes
  29. Or an average log fold change of < -0.25 and p < 0.05 for the time set of 15 minutes?
    • 2052 genes
  30. Or an average log fold change of < -0.25 and p < 0.05 for the time set of 30 minutes?
    • 3256 genes
  31. Or an average log fold change of < -0.25 and p < 0.05 for the time set of 60 minutes?
    • 2942 genes
  32. Or an average log fold change of < -0.25 and p < 0.05 for the time set of 240 minutes?
    • 3866 genes
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