Difference between revisions of "Alina's Assessment and Reflection"

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(Statement of Work: testing report update)
(Updating of Gene Database Testing Reports)
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*(Did not update GenMAPP aspects, left to Kevin)
 
*(Did not update GenMAPP aspects, left to Kevin)
 
*Compared found Gene ID formats with corresponding online resources (UniProt, RefSeq)
 
*Compared found Gene ID formats with corresponding online resources (UniProt, RefSeq)
 +
*Investigated Ensembl to compare gene totals
 
*Export Reports contributed to:
 
*Export Reports contributed to:
 
**[https://xmlpipedb.cs.lmu.edu/biodb/fall2013/index.php/TATK_E4:_TIGR4_Testing_Report#Compare_Gene_Database_to_Outside_Resource|E4] [https://xmlpipedb.cs.lmu.edu/biodb/fall2013/index.php/TATK_E3:_TIGR4_Testing_Report|E3] [https://xmlpipedb.cs.lmu.edu/biodb/fall2013/index.php/TATK_Export_One:_TIGR4_Testing_Report|E1]
 
**[https://xmlpipedb.cs.lmu.edu/biodb/fall2013/index.php/TATK_E4:_TIGR4_Testing_Report#Compare_Gene_Database_to_Outside_Resource|E4] [https://xmlpipedb.cs.lmu.edu/biodb/fall2013/index.php/TATK_E3:_TIGR4_Testing_Report|E3] [https://xmlpipedb.cs.lmu.edu/biodb/fall2013/index.php/TATK_Export_One:_TIGR4_Testing_Report|E1]

Revision as of 22:09, 13 December 2013

Contents

Statement of Work

  • Describe exactly what you did on the project.

Updating of Gene Database Testing Reports

  • Was responsible for running counts (XMLPipeDB Match, Tally Engine, SQL)
  • Performed visual inspections within gdb files
    • Systems table
    • UniProt table
    • RefSeq table
    • OriginalRowCounts
  • Provided screenshots when necessary
  • (Did not update GenMAPP aspects, left to Kevin)
  • Compared found Gene ID formats with corresponding online resources (UniProt, RefSeq)
  • Investigated Ensembl to compare gene totals
  • Export Reports contributed to:

XML/Exception File Comparison

  • Used XMLPipeDB Match in order to search Uniprot XML file for species IDs with format SP_[0-9][0-9][0-9][0-9] and got 2126 results.
  • This was saved as a text file in order to make compatible for Excel. This file and exceptions file were put in adjacent columns and Excel match function was used. All results found to be #N/A.
  • Excel File: ID Comparison


  • Provide references or links to artifacts of your work, such as:
    • Wiki pages
    • Other files or documents
    • Code or scripts

Assessment of Project

  • Give an objective assessment of the success of your project workflow and teamwork.
  • What worked and what didn't work?
  • What would you do differently if you could do it all over again?
  • Evaluate the Gene Database Project and Group Report in the following areas:
    1. Content: What is the quality of the work?
    2. Organization: Comment on the organization of the project and of your group's wiki pages.
    3. Completeness: Did your team achieve all of the project objectives? Why or why not?

Reflection on the Process

  • What did you learn?
    • With your head (biological or computer science principles)
    • With your heart (personal qualities and teamwork qualities that make things work or not work)?
    • With your hands (technical skills)?
  • What lesson will you take away from this project that you will still use a year from now?
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