Difference between revisions of "KSherbina Week 2"
From LMU BioDB 2013
(Added the last three reading frames.) |
(Added corresponding amino acid sequences.) |
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| Line 15: | Line 15: | ||
-2 aaa aug ccg cca gcg gaa cug gcg gcu ggg uua uac gcg gaa cau ggu auu agc aua | -2 aaa aug ccg cca gcg gaa cug gcg gcu ggg uua uac gcg gaa cau ggu auu agc aua | ||
-3 aaa ugc cgc cag cgg aac ugg cgg cug ggu uau acg cgg aac aug gua uua gca uac | -3 aaa ugc cgc cag cgg aac ugg cgg cug ggu uau acg cgg aac aug gua uua gca uac | ||
| + | :Corresponding amino acid sequences: | ||
| + | +1 RMLIPCSAYNPAASSAGGIL | ||
| + | +2 VCStopYHVPRITQPPVPLAAF | ||
| + | +3 YANTMFRVStopPSRQFRWRHF | ||
| + | -1 StopNAASGTGGWVIRGTWYStopH | ||
| + | -2 KMPPAELAAGLYAEHGISI | ||
| + | -3 KCRQRNWRLGYTRNMVLAY | ||
[[Category:Journal Entry]] | [[Category:Journal Entry]] | ||
Revision as of 06:27, 6 September 2013
| Assignment Description | Week 1 | Week 2 | Week 3 | Week 4 | Week 5 | Week 6 | Week 7 | Week 8 | Week 9 | Week 10 | Week 11 | Week 12 | Week 13 | Week 15 |
| Class Journal | Week 1 | Week 2 | Week 3 | Week 4 | Week 5 | Week 6 | Week 7 | Week 8 | Week 9 | |||||
| Individual Journal | Week 2 | Week 3 | Week 4 | Week 5 | Week 6 | Week 7 | Week 8 | Week 9 | Week 10 | Week 11 |
| Other | Week 5: Database Wiki |
| Final Project | Team H(oo)KD Project Page | Journal Club Presentation | Project Individual Journal |
Week 2 Individual Journal Assignment
- Given strand of DNA (top strand):
5'-cgtatgctaataccatgttccgcgtataacccagccgccagttccgctggcggcatttta-3'
- Complementary strand of DNA (bottom strand):
3'-gcatacgattatggtacaaggcgcatattgggtcggcggtcaaggcgaccgccgtaaaat-5'
- The 6 possible reading frame:
+1 cgu aug cua aua cca ugu ucc gcg uau aac cca gcc gcc agu ucc gcu ggc ggc auu uua +2 gua ugc uaa uac cau guu ccg cgu aua acc cag ccg cca guu ccg cug gcg gca uuu +3 uau gcu aau acc aug uuc cgc gua uaa ccc agc cgc cag uuc cgc ugg cgg cau uuu -1 uaa aau gcc gcc agc gga acu ggc ggc ugg guu aua cgc gga aca ugg uau uag cau -2 aaa aug ccg cca gcg gaa cug gcg gcu ggg uua uac gcg gaa cau ggu auu agc aua -3 aaa ugc cgc cag cgg aac ugg cgg cug ggu uau acg cgg aac aug gua uua gca uac
- Corresponding amino acid sequences:
+1 RMLIPCSAYNPAASSAGGIL +2 VCStopYHVPRITQPPVPLAAF +3 YANTMFRVStopPSRQFRWRHF -1 StopNAASGTGGWVIRGTWYStopH -2 KMPPAELAAGLYAEHGISI -3 KCRQRNWRLGYTRNMVLAY
