Difference between revisions of "Laurmagee: Week 3"
From LMU BioDB 2013
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==Reading Frames== | ==Reading Frames== | ||
| + | # First Reading Frame (+1) | ||
| + | #*cat sequence_file | ????? | ||
| + | #Second Reading Frame (+2) | ||
| + | #*cat sequence_file | ????? | ||
| + | #Third Reading Frame (+3) | ||
| + | #*cat sequence_file | ????? | ||
| + | #Fourth Reading Frame (-1) | ||
| + | #*cat sequence_file | ????? | ||
| + | #Fifth Reading Frame (-2) | ||
| + | #*cat sequence_file | ????? | ||
| + | #Sixth Reading Frame (-3) | ||
| + | #*cat sequence_file | ????? | ||
==XMLPipeDB Match Practice== | ==XMLPipeDB Match Practice== | ||
Revision as of 17:24, 12 September 2013
Complement of a Strand
- The appropriate processing commands are the following: cat sequence_file | sed "y/atgc/tacg/"
- This will turn a nucleotide sequence, "agcggtatac", into "tcgccatatg", it's compliment.
Reading Frames
- First Reading Frame (+1)
- cat sequence_file | ?????
- Second Reading Frame (+2)
- cat sequence_file | ?????
- Third Reading Frame (+3)
- cat sequence_file | ?????
- Fourth Reading Frame (-1)
- cat sequence_file | ?????
- Fifth Reading Frame (-2)
- cat sequence_file | ?????
- Sixth Reading Frame (-3)
- cat sequence_file | ?????
