Difference between revisions of "Stephen Louie Week 3"
From LMU BioDB 2013
(Edited "complement of a strand") |
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The command I used to get the complement strand was: | The command I used to get the complement strand was: | ||
cat prokaryote.txt | sed "y/atcg/tagc/" | cat prokaryote.txt | sed "y/atcg/tagc/" | ||
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| + | ==Reading Frames== | ||
| + | |||
| + | The six sets of text proccessing commands I used were: | ||
| + | |||
| + | cat prokaryote.txt | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed | ||
| + | cat prokaryote.txt | sed "s/^.//g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed | ||
| + | cat prokaryote.txt | sed "s/^..//g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed | ||
| + | cat prokaryote.txt | rev | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed | ||
| + | cat prokaryote.txt | rev | sed "s/^.//g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed | ||
| + | cat prokaryote.txt | rev | sed "s/^..//g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed | ||
Revision as of 00:39, 13 September 2013
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Complement of a Strand
The command I used to get the complement strand was:
cat prokaryote.txt | sed "y/atcg/tagc/"
Reading Frames
The six sets of text proccessing commands I used were:
cat prokaryote.txt | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed cat prokaryote.txt | sed "s/^.//g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed cat prokaryote.txt | sed "s/^..//g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed cat prokaryote.txt | rev | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed cat prokaryote.txt | rev | sed "s/^.//g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed cat prokaryote.txt | rev | sed "s/^..//g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed
