Difference between revisions of "Lena Week 3"
From LMU BioDB 2013
(answered compliment of a strand question) |
(reading frames) |
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| − | + | '''Compliment of a Reading Strand''' | |
:cat sequence_file | ????? | :cat sequence_file | ????? | ||
: ???? = sed "y/atcg/tagc/" | : ???? = sed "y/atcg/tagc/" | ||
| + | |||
| + | '''Reading Frames''' | ||
| + | |||
| + | :+1 seq_file | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed | ||
| + | :+2 seq_file | sed "s/^.//g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed | ||
| + | :+3 seq_file | sed "s/^..//g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed | ||
| + | :-1 seq_file | sed "y/actg/tgac/" | rev | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed | ||
| + | :-2 seq_file | sed "y/actg/tgac/" | rev | sed "s/^.//g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed | ||
| + | :-3 seq_file | sed "y/actg/tgac/" | rev | sed "s/^..//g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed | ||
Revision as of 01:29, 13 September 2013
Compliment of a Reading Strand
- cat sequence_file | ?????
- ???? = sed "y/atcg/tagc/"
Reading Frames
- +1 seq_file | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed
- +2 seq_file | sed "s/^.//g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed
- +3 seq_file | sed "s/^..//g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed
- -1 seq_file | sed "y/actg/tgac/" | rev | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed
- -2 seq_file | sed "y/actg/tgac/" | rev | sed "s/^.//g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed
- -3 seq_file | sed "y/actg/tgac/" | rev | sed "s/^..//g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed
