Difference between revisions of "Lena Week 3"
From LMU BioDB 2013
(reading frames) |
(simplified answer) |
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'''Compliment of a Reading Strand''' | '''Compliment of a Reading Strand''' | ||
| − | : | + | : sed "y/atcg/tagc/" |
| − | + | ||
'''Reading Frames''' | '''Reading Frames''' | ||
Revision as of 01:29, 13 September 2013
Compliment of a Reading Strand
- sed "y/atcg/tagc/"
Reading Frames
- +1 seq_file | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed
- +2 seq_file | sed "s/^.//g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed
- +3 seq_file | sed "s/^..//g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed
- -1 seq_file | sed "y/actg/tgac/" | rev | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed
- -2 seq_file | sed "y/actg/tgac/" | rev | sed "s/^.//g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed
- -3 seq_file | sed "y/actg/tgac/" | rev | sed "s/^..//g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed
