Difference between revisions of "Laurmagee: Week 4"
From LMU BioDB 2013
(Class Notes) |
(Ribosome Binding Site) |
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*#cat [file] | sed "s/[ct]at[at]at/ <minus10box>&<\/minus10box> /g" | sed -r "s/.{17} <minus10/ <\/minus35box> &/g" | *#cat [file] | sed "s/[ct]at[at]at/ <minus10box>&<\/minus10box> /g" | sed -r "s/.{17} <minus10/ <\/minus35box> &/g" | ||
*#cat [file] | sed "s/[ct]at[at]at/ <minus10box>&<\/minus10box> /g" | sed -r "s/.{17} <minus10/ <\/minus35box> &/g" | sed "s/"s/tt[gt]ac[at]<\/minus35box>/ <minus35box>&/g" | *#cat [file] | sed "s/[ct]at[at]at/ <minus10box>&<\/minus10box> /g" | sed -r "s/.{17} <minus10/ <\/minus35box> &/g" | sed "s/"s/tt[gt]ac[at]<\/minus35box>/ <minus35box>&/g" | ||
| + | |||
| + | *Ribosome Binding Site | ||
| + | *#cat [file] | sed "s/gag/ <rbs>&<\/rbs> /g" | ||
| + | *#cat [file] | sed "s/gag/ <rbs>&<\/rbs> /g" | sed "s/atg/start/g" | ||
| + | *#cat [file] | sed "s/gag/ <rbs>&<\/rbs> /g" | sed "s/<\/rbs>/&\n/g" | sed "2s/atg/start/1" | ||
Revision as of 17:32, 17 September 2013
- -10 box
- cat [file] | sed "s/[ct]at[at]at/ -10 box/g"
- cat [file] | sed "s/[ct]at[at]at/ <minus10box>&<\/minus10box> /g"
- -35 box
- cat [file] | sed "s/tt[gt]ac[at]/ -35 box/g"
- cat [file] | sed "s/tt[gt]ac[at]/ <minus35box>&<\/minus35box> /g"
- Together
- cat [file] | sed "s/[ct]at[at]at/ <minus10box>&<\/minus10box> /g" | sed "s/................. <minus10/ <\/minus35box> &/g"
- cat [file] | sed "s/[ct]at[at]at/ <minus10box>&<\/minus10box> /g" | sed -r "s/.{17} <minus10/ <\/minus35box> &/g"
- cat [file] | sed "s/[ct]at[at]at/ <minus10box>&<\/minus10box> /g" | sed -r "s/.{17} <minus10/ <\/minus35box> &/g" | sed "s/"s/tt[gt]ac[at]<\/minus35box>/ <minus35box>&/g"
- Ribosome Binding Site
- cat [file] | sed "s/gag/ <rbs>&<\/rbs> /g"
- cat [file] | sed "s/gag/ <rbs>&<\/rbs> /g" | sed "s/atg/start/g"
- cat [file] | sed "s/gag/ <rbs>&<\/rbs> /g" | sed "s/<\/rbs>/&\n/g" | sed "2s/atg/start/1"
