Difference between revisions of "Kevinmcgee Week 4"
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=Transcription and Translation= | =Transcription and Translation= | ||
==Computer Code== | ==Computer Code== | ||
| − | + | ||
| + | cat infA-E.coli-K12.txt|sed "s/cat[at]at/<minus10box>&<\/minus10box>/g"|sed -r "s/.{17}<minus10/<\/minus35box>&/g"|sed "s/tt[gt]ac[at]<\/minus35box>/<minus35box>&/g"|sed "s/gagg/<rbs>&<\/rbs>/g"|sed "s/<\/rbs>/&\n/g"|sed "s/atg/<start_codon>&<\/start_codon>/1"|sed "s/tga/<stop_codon>&<\/stop_codon>1/"|sed "s/aaaggt..../<terminator>&<\/terminator>/g"|sed ':a;N;$!ba;s/\n//g' | ||
| + | |||
==Genetic Code== | ==Genetic Code== | ||
| − | + | ttttcaccacaaga<start_codon>atg</start_codon>aatgttttcggcacatttctccccagagtgttataattgcggtcgcagagttggttacgctcattaccccgctgccgataaggaatttttcgcgtcaggtaacgcccatcgtttatctcaccgctcccttatacgttgcgcttttggtgcggcttagccgtgtgttttcggagtaatgtgccgaacctgtttgttgcgatttagcgcgcaaatc<minus35box>tttact</minus35box>tatttacagaacttcgg<minus10box>cattat</minus10box>cttgccggttcaaattacggtag<stop_codon>tga</stop_codon>1tacccca<rbs>gagg</rbs>attag<start_codon>atg</start_codon>gccaaagaagacaatat<stop_codon>tga</stop_codon>1aatgcaaggtaccgttcttgaaacgttgcctaataccatgttccgcgtagagttagaaaacggtcacgtggttactgcacacatctccggtaaaatgcgcaaaaactacatccgcatcctgacgggcgacaaagtgactgttgaactgaccccgtacgacctgagcaaaggccgcattgtcttccgtagtcgctgattgttttaccgcctgatgggcgaagagaaagaacgagta<terminator>aaaggtcggt</terminator>ttaaccggcctttttattttat | |
| − | + | ||
| + | #The genetic sequence actually transcribed is as follows: | ||
| + | |||
| + | auggccaaagaagacaatattgaaatgcaaggtaccgttcttgaaacgttgcctaataccatgttccgcguag | ||
| + | |||
| + | #The amino acids translated are as follows: | ||
| + | M A K E D N I E M Q G T V L E T L P N T M F R V stop | ||
| + | |||
| + | [[User:Kevinmcgee|Kevinmcgee]] ([[User talk:Kevinmcgee|talk]]) 19:50, 19 September 2013 (PDT) | ||
Latest revision as of 02:50, 20 September 2013
[edit] Transcription and Translation
[edit] Computer Code
cat infA-E.coli-K12.txt|sed "s/cat[at]at/<minus10box>&<\/minus10box>/g"|sed -r "s/.{17}<minus10/<\/minus35box>&/g"|sed "s/tt[gt]ac[at]<\/minus35box>/<minus35box>&/g"|sed "s/gagg/<rbs>&<\/rbs>/g"|sed "s/<\/rbs>/&\n/g"|sed "s/atg/<start_codon>&<\/start_codon>/1"|sed "s/tga/<stop_codon>&<\/stop_codon>1/"|sed "s/aaaggt..../<terminator>&<\/terminator>/g"|sed ':a;N;$!ba;s/\n//g'
[edit] Genetic Code
ttttcaccacaaga<start_codon>atg</start_codon>aatgttttcggcacatttctccccagagtgttataattgcggtcgcagagttggttacgctcattaccccgctgccgataaggaatttttcgcgtcaggtaacgcccatcgtttatctcaccgctcccttatacgttgcgcttttggtgcggcttagccgtgtgttttcggagtaatgtgccgaacctgtttgttgcgatttagcgcgcaaatc<minus35box>tttact</minus35box>tatttacagaacttcgg<minus10box>cattat</minus10box>cttgccggttcaaattacggtag<stop_codon>tga</stop_codon>1tacccca<rbs>gagg</rbs>attag<start_codon>atg</start_codon>gccaaagaagacaatat<stop_codon>tga</stop_codon>1aatgcaaggtaccgttcttgaaacgttgcctaataccatgttccgcgtagagttagaaaacggtcacgtggttactgcacacatctccggtaaaatgcgcaaaaactacatccgcatcctgacgggcgacaaagtgactgttgaactgaccccgtacgacctgagcaaaggccgcattgtcttccgtagtcgctgattgttttaccgcctgatgggcgaagagaaagaacgagta<terminator>aaaggtcggt</terminator>ttaaccggcctttttattttat
- The genetic sequence actually transcribed is as follows:
auggccaaagaagacaatattgaaatgcaaggtaccgttcttgaaacgttgcctaataccatgttccgcguag
- The amino acids translated are as follows:
M A K E D N I E M Q G T V L E T L P N T M F R V stop
Kevinmcgee (talk) 19:50, 19 September 2013 (PDT)
