Difference between revisions of "Mpetredi Week 5"
From LMU BioDB 2013
(fixed references hyperlink) |
(added notes about some sections) |
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#Located Quick Search Box (Under Query) | #Located Quick Search Box (Under Query) | ||
#Noticed the quick links around the top of the page, under the Quick Search box. Each link directs you to a specific section of the entry | #Noticed the quick links around the top of the page, under the Quick Search box. Each link directs you to a specific section of the entry | ||
| − | #*[[http://www.uniprot.org/uniprot/P00533#section_name Names]] | + | #*[[http://www.uniprot.org/uniprot/P00533#section_name Names]]: |
#*[[http://www.uniprot.org/uniprot/P00533#section_attribute Attributes]] | #*[[http://www.uniprot.org/uniprot/P00533#section_attribute Attributes]] | ||
| − | #*[[http://www.uniprot.org/uniprot/P00533#section_comments General annotation]] | + | #*[[http://www.uniprot.org/uniprot/P00533#section_comments General annotation]]: AKA Comments. Provides additional, brief information about the function, catalytic activity, enzyme regulation, subunit structure, sub cellular location, tissue specificity, post-translational modification, involvement in decease, and sequence similarities. Check this section first to get a basic idea of a subject before proceeding to the more fully detailed information. |
#*[[http://www.uniprot.org/uniprot/P00533#section_terms Ontologies]] | #*[[http://www.uniprot.org/uniprot/P00533#section_terms Ontologies]] | ||
#*[[http://www.uniprot.org/uniprot/P00533#section_interactions Interactions]] | #*[[http://www.uniprot.org/uniprot/P00533#section_interactions Interactions]] | ||
| Line 17: | Line 17: | ||
#*[[http://www.uniprot.org/uniprot/P00533#section_features Sequence annotation]] | #*[[http://www.uniprot.org/uniprot/P00533#section_features Sequence annotation]] | ||
#*[[http://www.uniprot.org/uniprot/P00533#section_seq Sequences]] | #*[[http://www.uniprot.org/uniprot/P00533#section_seq Sequences]] | ||
| − | #*[[http://www.uniprot.org/uniprot/P00533#section_ref References]] | + | #*[[http://www.uniprot.org/uniprot/P00533#section_ref References]]: Contains all materials used when compiling the report on P00533. |
#*[[http://www.uniprot.org/uniprot/P00533#section_web Web links]] | #*[[http://www.uniprot.org/uniprot/P00533#section_web Web links]] | ||
#*[[http://www.uniprot.org/uniprot/P00533#section_x-ref Cross-refs]] | #*[[http://www.uniprot.org/uniprot/P00533#section_x-ref Cross-refs]] | ||
#*[[http://www.uniprot.org/uniprot/P00533#section_general Entry info]] | #*[[http://www.uniprot.org/uniprot/P00533#section_general Entry info]] | ||
#*[[http://www.uniprot.org/uniprot/P00533#section_documents Documents]] | #*[[http://www.uniprot.org/uniprot/P00533#section_documents Documents]] | ||
| − | #*[[http://www.uniprot.org/uniprot/P00533#section_customize Customize]] | + | #*[[http://www.uniprot.org/uniprot/P00533#section_customize Customize]]: Use this to change the default ordering of sections. |
Revision as of 20:46, 26 September 2013
UniProt Exercise Journal
- Navigated to http://www.uniprot.org instead of http://web.expasy.org/docs/swiss-prot_guideline.html as per week 5 instruction
- Typed P00533 in search box on uniprot website.
- Sent to http://www.uniprot.org/uniprot/P00533. Link describes Epidermal growth factor receptor (EGFR).
- Clicked the 2.7.10.1 hyperlink.
- Redirected to http://enzyme.expasy.org/EC/2.7.10.1. This link describes the receptor "protein-tyrosine kinase."
- Located Quick Search Box (Under Query)
- Noticed the quick links around the top of the page, under the Quick Search box. Each link directs you to a specific section of the entry
- [Names]:
- [Attributes]
- [General annotation]: AKA Comments. Provides additional, brief information about the function, catalytic activity, enzyme regulation, subunit structure, sub cellular location, tissue specificity, post-translational modification, involvement in decease, and sequence similarities. Check this section first to get a basic idea of a subject before proceeding to the more fully detailed information.
- [Ontologies]
- [Interactions]
- [Alt products]
- [Sequence annotation]
- [Sequences]
- [References]: Contains all materials used when compiling the report on P00533.
- [Web links]
- [Cross-refs]
- [Entry info]
- [Documents]
- [Customize]: Use this to change the default ordering of sections.
P00533, or Epidermal Growth Factor Receptor: A Brief Summary
(My brief summary will go here)
Individual Assignment Response to Questions
- The purpose of this exercise was to become more familiar with the layout of information presented by UniProt for a particular sequence or protein.
- I learned how to locate relevant information pertaining to this course.
- I currently don't know how I will utilize the information for a certain sequence or protein in my project for this course.
