Difference between revisions of "Stephen Louie Week 5"
From LMU BioDB 2013
(Added to journal entry) |
(Added to journal entry) |
||
| Line 13: | Line 13: | ||
**GeneID: | **GeneID: | ||
*Observed "Ontologies" section. Section contained words and phrases that pertained to the protein's relevance. | *Observed "Ontologies" section. Section contained words and phrases that pertained to the protein's relevance. | ||
| − | *Observed "Sequence annotation(Features)" section. | + | *Observed "Sequence annotation(Features)" section. Section listed the Amino acid sequence and detailed what function each position affected. |
| + | *Switched interface between TXT (flat), XML (tags), RDF/XML (web), GFF (Genomic specialized), and FASTA (Sequence information) formats. | ||
| + | ==Summary== | ||
Revision as of 04:37, 27 September 2013
Lab Journal
- Accessed UniProt website
- Entered Primary Ascension Number:P00533 into Query. Was taken to page P00533 (EGFR_HUMAN) with alternate name "Epidermal growth factor receptor"
- Observed "Names and origin" section. Section contains protein names with alternative names. It also contains the gene names and synonyms. The organism of interest is listed. The taxonomic identifier and its lineage is listed as well.
- Observed "References" section. Section contained list of papers and journals used in research.
- Observed "General Annotations" section. Section contained details such as functions, structure, and location.
- Accessed "Cross-references" section. Observed was was found in several databases.
- EMBL:
- Interpro:
- PDB:
- Pfam:
- RefSeq:
- GeneID:
- Observed "Ontologies" section. Section contained words and phrases that pertained to the protein's relevance.
- Observed "Sequence annotation(Features)" section. Section listed the Amino acid sequence and detailed what function each position affected.
- Switched interface between TXT (flat), XML (tags), RDF/XML (web), GFF (Genomic specialized), and FASTA (Sequence information) formats.
