Difference between revisions of "Ksherbina Week 9"
From LMU BioDB 2013
(→Export Information: Updated the time it took to import UniProt XML after rerunning the import on my computer.) |
(→Export Information: Recorded how much time it took to import the GO OBO-XML file and on what computer all of this work is being done.) |
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| Line 5: | Line 5: | ||
Version of GenMAPP Builder: | Version of GenMAPP Builder: | ||
| − | Computer on which export was run: | + | Computer on which export was run: Personal computer |
Postgres Database name: VC_KS_20131022_gmb2b70 | Postgres Database name: VC_KS_20131022_gmb2b70 | ||
| Line 15: | Line 15: | ||
GO OBO-XML filename: go_daily-termdb_KS_20131022.obo-xml | GO OBO-XML filename: go_daily-termdb_KS_20131022.obo-xml | ||
* GO OBO-XML version (The version information can be found in the file properties after the file downloaded from the [http://beta.geneontology.org/page/download-ontology GO Download page] has been unzipped): | * GO OBO-XML version (The version information can be found in the file properties after the file downloaded from the [http://beta.geneontology.org/page/download-ontology GO Download page] has been unzipped): | ||
| − | * Time taken to import: | + | * Time taken to import: 8.81 minutes |
* Time taken to process: | * Time taken to process: | ||
Revision as of 19:31, 22 October 2013
| Assignment Description | Week 1 | Week 2 | Week 3 | Week 4 | Week 5 | Week 6 | Week 7 | Week 8 | Week 9 | Week 10 | Week 11 | Week 12 | Week 13 | Week 15 |
| Class Journal | Week 1 | Week 2 | Week 3 | Week 4 | Week 5 | Week 6 | Week 7 | Week 8 | Week 9 | |||||
| Individual Journal | Week 2 | Week 3 | Week 4 | Week 5 | Week 6 | Week 7 | Week 8 | Week 9 | Week 10 | Week 11 |
| Other | Week 5: Database Wiki |
| Final Project | Team H(oo)KD Project Page | Journal Club Presentation | Project Individual Journal |
Export Information
Version of GenMAPP Builder:
Computer on which export was run: Personal computer
Postgres Database name: VC_KS_20131022_gmb2b70
UniProt XML filename: UniProt_V_cholerae_KSTV_20131022
- UniProt XML version (The version information can be found at the UniProt News Page): UniProt release 2013_10
- Time taken to import: 4.20 minutes
GO OBO-XML filename: go_daily-termdb_KS_20131022.obo-xml
- GO OBO-XML version (The version information can be found in the file properties after the file downloaded from the GO Download page has been unzipped):
- Time taken to import: 8.81 minutes
- Time taken to process:
GOA filename:
- GOA version (News on this page records past releases; current information can be found in the Last modified field on the FTP site):
- Time taken to import:
Name of .gdb file:
- Time taken to export .gdb:
- Upload your file and link to it here.
Note:
Lab Notebook
- Download GenMAPP Builder 2.0b70 from http://sourceforge.net/projects/xmlpipedb/files/GenMAPP%20Builder/
- Download XMLPipeDB Utilities 2.3.1 from http://sourceforge.net/projects/xmlpipedb/files/
