Difference between revisions of "Ksherbina Week 9"
From LMU BioDB 2013
(→Export Information: Recorded the time it took to import the GOA file) |
(→Export Information: Added file names for GOA and .gdb file.) |
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Postgres Database name: VC_KS_20131022_gmb2b70 | Postgres Database name: VC_KS_20131022_gmb2b70 | ||
| − | UniProt XML filename: UniProt_V_cholerae_KSTV_20131022 | + | UniProt XML filename: UniProt_V_cholerae_KSTV_20131022.xml |
* UniProt XML version (The version information can be found at [http://uniprot.org/news the UniProt News Page]): UniProt release 2013_10 | * UniProt XML version (The version information can be found at [http://uniprot.org/news the UniProt News Page]): UniProt release 2013_10 | ||
* Time taken to import: 4.20 minutes | * Time taken to import: 4.20 minutes | ||
| Line 18: | Line 18: | ||
* Time taken to process: 7.33 minutes | * Time taken to process: 7.33 minutes | ||
| − | GOA filename: | + | GOA filename: 46.V_cholerae_ATCC_39315_KS_20131022.goa |
* GOA version (News on [http://www.ebi.ac.uk/GOA/ this page] records past releases; current information can be found in the Last modified field on the [ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/proteomes/ FTP site]): | * GOA version (News on [http://www.ebi.ac.uk/GOA/ this page] records past releases; current information can be found in the Last modified field on the [ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/proteomes/ FTP site]): | ||
* Time taken to import: 0.10 minutes | * Time taken to import: 0.10 minutes | ||
| − | Name of .gdb file: | + | Name of .gdb file: Vc-Std_20131022_KS.gdb |
* Time taken to export .gdb: | * Time taken to export .gdb: | ||
* Upload your file and link to it here. | * Upload your file and link to it here. | ||
Revision as of 19:45, 22 October 2013
| Assignment Description | Week 1 | Week 2 | Week 3 | Week 4 | Week 5 | Week 6 | Week 7 | Week 8 | Week 9 | Week 10 | Week 11 | Week 12 | Week 13 | Week 15 |
| Class Journal | Week 1 | Week 2 | Week 3 | Week 4 | Week 5 | Week 6 | Week 7 | Week 8 | Week 9 | |||||
| Individual Journal | Week 2 | Week 3 | Week 4 | Week 5 | Week 6 | Week 7 | Week 8 | Week 9 | Week 10 | Week 11 |
| Other | Week 5: Database Wiki |
| Final Project | Team H(oo)KD Project Page | Journal Club Presentation | Project Individual Journal |
Export Information
Version of GenMAPP Builder:
Computer on which export was run: Personal computer
Postgres Database name: VC_KS_20131022_gmb2b70
UniProt XML filename: UniProt_V_cholerae_KSTV_20131022.xml
- UniProt XML version (The version information can be found at the UniProt News Page): UniProt release 2013_10
- Time taken to import: 4.20 minutes
GO OBO-XML filename: go_daily-termdb_KS_20131022.obo-xml
- GO OBO-XML version (The version information can be found in the file properties after the file downloaded from the GO Download page has been unzipped):
- Time taken to import: 8.81 minutes
- Time taken to process: 7.33 minutes
GOA filename: 46.V_cholerae_ATCC_39315_KS_20131022.goa
- GOA version (News on this page records past releases; current information can be found in the Last modified field on the FTP site):
- Time taken to import: 0.10 minutes
Name of .gdb file: Vc-Std_20131022_KS.gdb
- Time taken to export .gdb:
- Upload your file and link to it here.
Note:
Lab Notebook
- Download GenMAPP Builder 2.0b70 from http://sourceforge.net/projects/xmlpipedb/files/GenMAPP%20Builder/
- Download XMLPipeDB Utilities 2.3.1 from http://sourceforge.net/projects/xmlpipedb/files/
