Difference between revisions of "Lena's Notes"

Latest revision as of 17:15, 24 October 2013

consenus sequence: codons that like code for somethin particular.

brackets code for "or"

consensus sequnce for -10 site: [ct]at[at]at

-10 site could be... cataat tattat cattat tatat

hairpin sequence is aaaaggt you should see gcctttt, because t=u (mrna) and u binds with g

vibrio cholerae id: VC_#### VC_[0-9][0-9][0-9][0-9]

java -jar xmlpipedb-match-1.1.1.jar "VC_[0-9][0-9][0-9][0-9]" <uniprot-46.VC_cholerae_ATCC_39315.xml

select count (*) from genenametype where type = 'ordered locus' and value ~ 'VC_(A|)[0-9][0-9][0-9][0-9]';