Difference between revisions of "Ksherbina Week 10"
From LMU BioDB 2013
(→Locate journal articles that measure gene expression: Added a comment about a question to ask Dr. Dahlquist) |
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<!-- Song et al. (2013) Chlamydia trachomatis Plasmid-Encoded Pgp4 Is a Transcriptional Regulator of Virulence-Associated Genes --> | <!-- Song et al. (2013) Chlamydia trachomatis Plasmid-Encoded Pgp4 Is a Transcriptional Regulator of Virulence-Associated Genes --> | ||
<!-- Carlson et al. (2008) The Chlamydia trachomatis Plasmid Is a Transcriptional Regulator of Chromosomal Genes and a Virulence Factor --> | <!-- Carlson et al. (2008) The Chlamydia trachomatis Plasmid Is a Transcriptional Regulator of Chromosomal Genes and a Virulence Factor --> | ||
| + | <!--Belland et al. (2003) Transcriptome analysis of chlamydial growth during IFN-γ-mediated persistence and reactivation: microarray data on desktop--> | ||
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<!-- Go to [http://www.ebi.ac.uk/microarray-as/ae/ EBI ArrayExpress] and in the search box type "organism:Chlamydia trachomatis" --> | <!-- Go to [http://www.ebi.ac.uk/microarray-as/ae/ EBI ArrayExpress] and in the search box type "organism:Chlamydia trachomatis" --> | ||
[[Category:Journal Entry]] | [[Category:Journal Entry]] | ||
[[Category:Individual Homework]] | [[Category:Individual Homework]] | ||
Revision as of 08:40, 31 October 2013
| Assignment Description | Week 1 | Week 2 | Week 3 | Week 4 | Week 5 | Week 6 | Week 7 | Week 8 | Week 9 | Week 10 | Week 11 | Week 12 | Week 13 | Week 15 |
| Class Journal | Week 1 | Week 2 | Week 3 | Week 4 | Week 5 | Week 6 | Week 7 | Week 8 | Week 9 | |||||
| Individual Journal | Week 2 | Week 3 | Week 4 | Week 5 | Week 6 | Week 7 | Week 8 | Week 9 | Week 10 | Week 11 |
| Other | Week 5: Database Wiki |
| Final Project | Team H(oo)KD Project Page | Journal Club Presentation | Project Individual Journal |
Locate journal article describing C. trachomatis reference genome
- Go to the PubMed site through the link provided in the LibGuide for the class.
- Beneath the search bar at the top of the page, click on the "Advanced" link.
- Create filters for the search:
- In the first blank field, type in the species name: Chlamydia trachomatis.
- In the drop down menu to the left of that first field, select "MeSH Terms".
- In the next blank field, type in the term "genome".
- In the drop down menu to the left of this field, select "Title".
- Click on the "Search" button to search for an article satisfying the filters that were set.
- Go to the last page of the search results. Since you are looking for the first description of the reference genome for the species of interest, the journal article you are looking for will probably be one of the older articles that come up in the search.
- Click on the link of an article that seems promising. If, after reading the abstract, you believe that this is the article that you are looking for, click on one of the links in the top right under "Links to full text" to retrieve the full article.
