Difference between revisions of "Ksherbina Week 10"
From LMU BioDB 2013
(→Locate journal articles that measure gene expression: Added description of search results for PubMed.) |
(→Locate journal articles that measure gene expression: Made one of the bullets bold) |
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#*In the drop down menu to the left of this field, select "Title/Abstract". | #*In the drop down menu to the left of this field, select "Title/Abstract". | ||
#Click on the "Search" button to search for articles meeting the filter criteria. | #Click on the "Search" button to search for articles meeting the filter criteria. | ||
| − | #*None of the articles that appeared in the results included microarray data that will work for this project either as supplementary material or in an external database. Some of the papers used human microarrays while other papers that used ''C. trachomatis'' arrays did not give information about accessing the raw microarray data. | + | #*'''None of the articles that appeared in the results included microarray data that will work for this project either as supplementary material or in an external database. Some of the papers used human microarrays while other papers that used ''C. trachomatis'' arrays did not give information about accessing the raw microarray data.''' |
<!-- QUESTION FOR DR. DAHLQUIST: Are we only looking at articles that collected data using microarrays created from the species genome (some articles used human arrays)?--> | <!-- QUESTION FOR DR. DAHLQUIST: Are we only looking at articles that collected data using microarrays created from the species genome (some articles used human arrays)?--> | ||
Revision as of 02:39, 1 November 2013
| Assignment Description | Week 1 | Week 2 | Week 3 | Week 4 | Week 5 | Week 6 | Week 7 | Week 8 | Week 9 | Week 10 | Week 11 | Week 12 | Week 13 | Week 15 |
| Class Journal | Week 1 | Week 2 | Week 3 | Week 4 | Week 5 | Week 6 | Week 7 | Week 8 | Week 9 | |||||
| Individual Journal | Week 2 | Week 3 | Week 4 | Week 5 | Week 6 | Week 7 | Week 8 | Week 9 | Week 10 | Week 11 |
| Other | Week 5: Database Wiki |
| Final Project | Team H(oo)KD Project Page | Journal Club Presentation | Project Individual Journal |
Locate journal article describing C. trachomatis reference genome
- Go to the PubMed site through the link provided in the LibGuide for the class.
- Beneath the search bar at the top of the page, click on the "Advanced" link.
- Create filters for the search:
- In the first blank field, type in the species name: Chlamydia trachomatis.
- In the drop down menu to the left of that first field, select "MeSH Terms".
- In the next blank field, type in the term "genome".
- In the drop down menu to the left of this field, select "Title".
- Click on the "Search" button to search for an article satisfying the filters that were set.
- Go to the last page of the search results. Since you are looking for the first description of the reference genome for the species of interest, the journal article you are looking for will probably be one of the older articles that come up in the search.
- Click on the link of an article that seems promising. If, after reading the abstract, you believe that this is the article that you are looking for, click on one of the links in the top right under "Links to full text" to retrieve the full article.
Locate journal articles that measure gene expression
- Go to the PubMed site through the link provided in the LibGuide for the class.
- Beneath the search bar at the top of the page, click on the "Advanced" link.
- Create filters for the search:
- In the first blank field, type in the species name: Chlamydia trachomatis.
- In the drop down menu to the left of that first field, select "MeSH Terms".
- In the next blank field, type in the term "microarray".
- In the drop down menu to the left of this field, select "Title/Abstract".
- Click on the "Search" button to search for articles meeting the filter criteria.
- None of the articles that appeared in the results included microarray data that will work for this project either as supplementary material or in an external database. Some of the papers used human microarrays while other papers that used C. trachomatis arrays did not give information about accessing the raw microarray data.
