Difference between revisions of "Lena Week 10"

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(microarray data)
(microarray data)
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===microarray data===
 
===microarray data===
  
*I used the arrayexpress search to look for the species leishmania major.  There were 12 experiments found, but only 5 were transcription profiling by array.  For the first two, I could not find articles to go with the data, but the third experiment did have a published paperThe title was...
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*I used the arrayexpress search to look for the species leishmania major.  There were 12 experiments found, but only 5 were transcription profiling by array.  None of the ones I searched through had papers associated with them that I could find.  I searched for authors and keye words in Google Scholar and PubMed to no avail.
  
"Expression profiling using random genomic DNA microarrays identifies differentially expressed genes associated with three major developmental stages of the protozoan parasite Leishmania major"
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*I found some good articles outlining how mircoarray experiments were used on the leishmania genome, but then I could not find the raw data associated with it.  Luckily my group members had more luck and pointed me in the way of some good papers.
*Natalia S Akopyants, Robin S Matlib, Elena N Bukanova, Matthew R Smeds, Bernard H Brownstein, Gary D Stormo, Stephen M Beverley, (2004) Expression profiling using random genomic DNA microarrays identifies differentially expressed genes associated with three major developmental stages of the protozoan parasite Leishmania major, ''Molecular and Biochemical Parasitology'','''136''':71-86
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*http://www.sciencedirect.com/science/article/pii/S0166685103001002
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*[[Media:Leishmania_microarray.pdf]]
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Revision as of 07:12, 1 November 2013

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC310692/ : A Physical Map of the Leishmania major Friedlin Genome

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC145848/ : The Leishmania genome comprises 36 chromosomes conserved across widely divergent human pathogenic species.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3279888/ : Genomic Organization of Leishmania Species

http://www.ncbi.nlm.nih.gov/pubmed/9196743 : Parasite genome analysis. A global map of the Leishmania major genome: prelude to genomic sequencing.

http://www.ncbi.nlm.nih.gov/pubmed/15500921 : Shotgun optical mapping of the entire Leishmania major Friedlin genome.

http://www.sciencedirect.com/science/article/pii/S0169475898012757 : The Complete Chromosomal Organization of the Reference Strain of the Leishmania Genome Project, L. major `Friedlin'

Contents

Annotated Bibliography

Genome sequencing for leishmania

prospective search

microarray data

  • I used the arrayexpress search to look for the species leishmania major. There were 12 experiments found, but only 5 were transcription profiling by array. None of the ones I searched through had papers associated with them that I could find. I searched for authors and keye words in Google Scholar and PubMed to no avail.
  • I found some good articles outlining how mircoarray experiments were used on the leishmania genome, but then I could not find the raw data associated with it. Luckily my group members had more luck and pointed me in the way of some good papers.
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