Difference between revisions of "Ksherbina Project Notebook"
From LMU BioDB 2013
(→Week 12: Added step 2.) |
(→Week 12: Copied a template of the gene database testing report) |
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#*Java SE 7u45 from http://www.oracle.com/technetwork/java/javase/downloads/index.html | #*Java SE 7u45 from http://www.oracle.com/technetwork/java/javase/downloads/index.html | ||
#Created an account on [http://sourceforge.net/ SourceForge]. | #Created an account on [http://sourceforge.net/ SourceForge]. | ||
| + | |||
| + | ===Gene Database Testing Report=== | ||
| + | |||
| + | Version of GenMAPP Builder: | ||
| + | |||
| + | Computer on which export was run: | ||
| + | |||
| + | Postgres Database name: | ||
| + | |||
| + | UniProt XML filename: | ||
| + | * UniProt XML version (The version information can be found at [http://uniprot.org/news the UniProt News Page]): | ||
| + | * Time taken to import: | ||
| + | |||
| + | GO OBO-XML filename: | ||
| + | * GO OBO-XML version (The version information can be found in the file properties after the file downloaded from the [http://beta.geneontology.org/page/download-ontology GO Download page] has been unzipped): | ||
| + | * Time taken to import: | ||
| + | * Time taken to process: | ||
| + | |||
| + | GOA filename: | ||
| + | * GOA version (News on [http://www.ebi.ac.uk/GOA/ this page] records past releases; current information can be found in the Last modified field on the [ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/proteomes/ FTP site]): | ||
| + | * Time taken to import: | ||
| + | |||
| + | Name of .gdb file: | ||
| + | * Time taken to export .gdb: | ||
| + | * Upload your file and link to it here. | ||
| + | |||
| + | Note: | ||
==Week 13== | ==Week 13== | ||
Revision as of 18:08, 14 November 2013
| Assignment Description | Week 1 | Week 2 | Week 3 | Week 4 | Week 5 | Week 6 | Week 7 | Week 8 | Week 9 | Week 10 | Week 11 | Week 12 | Week 13 | Week 15 |
| Class Journal | Week 1 | Week 2 | Week 3 | Week 4 | Week 5 | Week 6 | Week 7 | Week 8 | Week 9 | |||||
| Individual Journal | Week 2 | Week 3 | Week 4 | Week 5 | Week 6 | Week 7 | Week 8 | Week 9 | Week 10 | Week 11 |
| Other | Week 5: Database Wiki |
| Final Project | Team H(oo)KD Project Page | Journal Club Presentation | Project Individual Journal |
Week 12
- Downloaded the following software onto my personal computer:
- Latest version of GenMAPP Builder (gmbuilder2.0-b71) from SourceForge
- Java SE 7u45 from http://www.oracle.com/technetwork/java/javase/downloads/index.html
- Created an account on SourceForge.
Gene Database Testing Report
Version of GenMAPP Builder:
Computer on which export was run:
Postgres Database name:
UniProt XML filename:
- UniProt XML version (The version information can be found at the UniProt News Page):
- Time taken to import:
GO OBO-XML filename:
- GO OBO-XML version (The version information can be found in the file properties after the file downloaded from the GO Download page has been unzipped):
- Time taken to import:
- Time taken to process:
GOA filename:
- GOA version (News on this page records past releases; current information can be found in the Last modified field on the FTP site):
- Time taken to import:
Name of .gdb file:
- Time taken to export .gdb:
- Upload your file and link to it here.
Note:
