Difference between revisions of "Stephen Louie Project Notebook"
From LMU BioDB 2013
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*Conducted meeting with guilds. No meeting was conducted for Quality Assurance | *Conducted meeting with guilds. No meeting was conducted for Quality Assurance | ||
*Sat in on GenMAPP builder guild meeting for absent teammate | *Sat in on GenMAPP builder guild meeting for absent teammate | ||
| + | *Downloaded and extracted data source files | ||
| + | **UniProt XML | ||
| + | ***Followed directions provided [[Running GenMAPP Builder|Here]] | ||
| + | **GOA | ||
| + | ***'''Note:Current directions were not working. Follow these instructions for your respective species''' | ||
| + | ***From Running GenMAPP Builder page, clicked on the UniProt-GOA Downloads link. | ||
| + | ***Was given an error message. Changed url from "ftp" to "http" at beginning. | ||
| + | ***Was entered, was taken to Index of/pub/database/GO/goa | ||
| + | ***Clicked on "proteomes" folder | ||
| + | ***Directed to Index of /pub/databases/GO/goa/proteomes. Downloaded 58.R_meliloti.goa | ||
| + | ***Note: R. meliloti is an alternative name to S. Melitoti. | ||
| + | **GO OBO-XML | ||
| + | ***Followed directions provided [[Running GenMAPP Builder|Here]] | ||
| + | *Created new database in PostgreSQL | ||
| + | **Followed directions provided [[Running GenMAPP Builder|Here]] | ||
==External Links== | ==External Links== | ||
Revision as of 06:38, 15 November 2013
Contents |
Week 12
11/12/2013
- Gave presentation for Genome paper to class
11/14/2013
- Conducted meeting with guilds. No meeting was conducted for Quality Assurance
- Sat in on GenMAPP builder guild meeting for absent teammate
- Downloaded and extracted data source files
- UniProt XML
- Followed directions provided Here
- GOA
- Note:Current directions were not working. Follow these instructions for your respective species
- From Running GenMAPP Builder page, clicked on the UniProt-GOA Downloads link.
- Was given an error message. Changed url from "ftp" to "http" at beginning.
- Was entered, was taken to Index of/pub/database/GO/goa
- Clicked on "proteomes" folder
- Directed to Index of /pub/databases/GO/goa/proteomes. Downloaded 58.R_meliloti.goa
- Note: R. meliloti is an alternative name to S. Melitoti.
- GO OBO-XML
- Followed directions provided Here
- UniProt XML
- Created new database in PostgreSQL
- Followed directions provided Here
