Difference between revisions of "Mpetredi Week 13"
From LMU BioDB 2013
(added note about XML observations) |
(→Lab Progression) |
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##*[[http://www.ncbi.nlm.nih.gov/nucleotide/AL591985 plasmid pSymB]] | ##*[[http://www.ncbi.nlm.nih.gov/nucleotide/AL591985 plasmid pSymB]] | ||
##**SMb##### | ##**SMb##### | ||
| − | ##***NOTE: in the XML file (from [[[[Team Name]]]] appears as SM_b for gene ID; uses SMb for ORF name | + | ##***NOTE: in the XML file (from [[[[Team Name]]]]) appears as SM_b for gene ID; uses SMb for ORF name |
##*[[http://www.ncbi.nlm.nih.gov/nucleotide/AE006469 plasmid pSymA]] | ##*[[http://www.ncbi.nlm.nih.gov/nucleotide/AE006469 plasmid pSymA]] | ||
##**SMa#### | ##**SMa#### | ||
Revision as of 18:27, 19 November 2013
Mitchell Petredis
[[Team Name]]
Lab Progression
- Attempting to find URL pattern of S. meliloti
- Navigated to model organism database (link: http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?org=ntsm01)
- Clicked on all 3 GenBank Accession.Versions and looked for locus ID formatting
- [Complete Chromosome]
- SMc#####
- [plasmid pSymB]
- SMb#####
- NOTE: in the XML file (from [[Team Name]]) appears as SM_b for gene ID; uses SMb for ORF name
- SMb#####
- [plasmid pSymA]
- SMa####
- [Complete Chromosome]
- Copy any locus ID that follows the format of the options above
- After many trials, the general link looks like this: http://cmr.jcvi.org/tigr-scripts/CMR/shared/GenePage.cgi?locus=~
- Copied link to Eclipse
