Difference between revisions of "Leishmania major Week 13 Status Report"
From LMU BioDB 2013
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:2.)We managed to work through all the things that didn't work this week. At this time we are waiting for the export to complete to test gene database link and microarray data. | :2.)We managed to work through all the things that didn't work this week. At this time we are waiting for the export to complete to test gene database link and microarray data. | ||
:3.)Currently we do not have any problems we are aware of, but after a entire work session of working through problems today, I think we are prepared to work through problems that may come up in the next work session. | :3.)Currently we do not have any problems we are aware of, but after a entire work session of working through problems today, I think we are prepared to work through problems that may come up in the next work session. | ||
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| + | ===[[User:Gleis|Gabriel Leis]]=== | ||
| + | #What worked? | ||
| + | #: | ||
| + | #What didn't work? | ||
| + | #: | ||
| + | #What will I do next to fix what didn't work? | ||
| + | #: | ||
==GenMAPP Data== | ==GenMAPP Data== | ||
Revision as of 18:39, 21 November 2013
Contents |
Import/Export GenMAPP
Name:Leishmania_major_18112013
Export Information
- Uniprot: 7.42 minutes
- File:UniprotXML Leishmania 05112013 Gabe Lena.xml
- GO OBO: 5.96 minutes
- File:Leishmania 05112013 Gabe Lena.obo-xml.gz
- GOA: 0.04 minutes
- File:LeishmaniaGOA 19112013 Lena Gabe.goa
Files
- Newly Updates Database:File:Leishmania major 19112013 Dist.zip
- Name of .gdb File:File:Leishmania 05112013 Lena Gabe.gdb
- Fixed Microarray Data:File:L.majorCompiledRawData C 21112013.txt
Reflections
Lena Hunt
- 1.)We got our database to export into GenMAPP. Originally it was showing a generic database, and it wouldn't recognize the OrderedLocusNames. We fixed it in Eclipse and uploaded it to the homepage. We then successfully got GenMAPP to recognize our database. We also updated our microarray data so that the gene IDs did not have extra numbers (we used the : as a separator.) We then went through and changed all the "Error" messages with a 0 so as not to confuse GenMAPP.
- 2.)We managed to work through all the things that didn't work this week. At this time we are waiting for the export to complete to test gene database link and microarray data.
- 3.)Currently we do not have any problems we are aware of, but after a entire work session of working through problems today, I think we are prepared to work through problems that may come up in the next work session.
Gabriel Leis
- What worked?
- What didn't work?
- What will I do next to fix what didn't work?
GenMAPP Data
- Adjusted the dye swaps
- renamed the samples and compiled the microarray data or each species.
- Data now ready for statistical analysis
