Difference between revisions of "Team H(oo)KD Week 13 Status Report"

Revision as of 05:30, 22 November 2013

Coder Status Update

Reflection

Quality Assurance Status Update

Reflection

GenMAPP User Status Update

Status Report

Milestone 2 Read the microarray paper to understand the experiment.

• Read Microarray Paper to understand experiment and find relations between raw data and article.

Create a table or list that shows the correspondence between the samples in the experiment and the files you have downloaded.

• Downloaded sdrf file and opened in excel to determine list that shows correspondence between samples in experiment and raw data file downloaded.

Determine how many biological or technical replicates, and which samples were labeled with Cy3 or Cy5.

• Determined 4 replicates based on article and data.

Create a Master Raw Data file that contains the IDs and columns of data required for further analysis.

• Created Master Spreadsheet and uploaded it to team wiki.

Consult with Dr. Dahlquist on how to process the data (normalization, statistics).

• Consulted with Dr. Dahlquist on how to process data and recorded steps in group project individual journal.

Reflection

1. What were the week’s key accomplishments?
   • The key accomplishments (for my position in the group) were understanding how to run the dChip software and convert and collect the raw data used into a workable format.
2. What are next week’s target accomplishments?
   • By next week we would like to perform GenMAPP and MAPPFinder analysis of the data.
3. What team strengths were seen this week?
   • Every member on our team accomplishes their role in an efficient and effective manner. If one member needs help with their role, the others are more than willing to help.
4. What team weaknesses were seen this week?
   • The Affymetrix data and use of the dChip software were confusing at first, but easily resolved once Dr. Dahlquist was consulted.

-Dwilliams (talk) 21:27, 21 November 2013 (PST)