Difference between revisions of "Gleis Week 14"

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(Status Report)
(Status Report)
 
Line 17: Line 17:
 
*Tallyengine and postgres reported 8355 ORF IDs
 
*Tallyengine and postgres reported 8355 ORF IDs
 
*Access reports 8354 Ordered Locus Names
 
*Access reports 8354 Ordered Locus Names
 +
*attempted import of microarray data
 +
*import yielded the following error:
 +
:[[Media:Leishmania Data import error.PNG]]

Latest revision as of 22:31, 26 November 2013

[edit] To Do List

  • Identify new URL pattern??
  • Finish export and upload microarray data

[edit] Status Report

  • Began new export
  • Used postgres and TallyEngine to ensure proper database version
  • Postgres identified geneID formatting and exceptions:
Media:SQL Query ResultsandIDPattern Leishmania.PNG
  • Five exceptions found- identify if relevant
  • Export Status update @ 67%
  • Screenshot of command prompt @ 67% of export
Media:Leishmania GDBexport status 67percent.PNG
  • Export to GenMAPP finished
  • Screenshot of command prompt at finish
Media:Leishmania GDBexport complete 26112013.PNG
  • No errors appear to be present in export
  • Tallyengine and postgres reported 8355 ORF IDs
  • Access reports 8354 Ordered Locus Names
  • attempted import of microarray data
  • import yielded the following error:
Media:Leishmania Data import error.PNG
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