Difference between revisions of "Alina's Assessment and Reflection"
From LMU BioDB 2013
(→Updating of Gene Database Testing Reports) |
(→Updating of Gene Database Testing Reports: excel comparison info) |
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===Updating of Gene Database Testing Reports=== | ===Updating of Gene Database Testing Reports=== | ||
| − | + | *Was responsible for running counts (XMLPipeDB Match, Tally Engine, SQL) | |
| − | + | *Performed visual inspections within gdb files | |
| − | + | *Provided screenshots when necessary | |
| − | + | *(Did not update GenMAPP aspects, left to Kevin) | |
| − | + | *Compared found Gene ID formats with corresponding online resources (UniProt, RefSeq) | |
| − | + | *Export Reports contributed to: | |
| − | + | **[https://xmlpipedb.cs.lmu.edu/biodb/fall2013/index.php/TATK_E4:_TIGR4_Testing_Report#Compare_Gene_Database_to_Outside_Resource|E4] [https://xmlpipedb.cs.lmu.edu/biodb/fall2013/index.php/TATK_E3:_TIGR4_Testing_Report|E3] [https://xmlpipedb.cs.lmu.edu/biodb/fall2013/index.php/TATK_Export_One:_TIGR4_Testing_Report|E1] | |
| + | |||
| + | ==XML/Exception File Comparison== | ||
| + | *first search in xmlmatch: | ||
| + | **searched for SP_[0-9][0-9][0-9][0-9] in uniprot file | ||
| + | **got 2126 match results | ||
| + | **saved to text file | ||
| + | *used excel to compare lists | ||
| + | **to convert match id's from SP_#### to SP####, used control F (search/replace function) to replace underscore with a 'no space' | ||
| + | *link to instructions for excel match comparison found here: [[http://xmlpipedb.sourceforge.net/wiki/index.php/Using_Microsoft_Excel_to_Compare_ID_Lists]] | ||
| + | *NO Matches found, all results were N/A | ||
| + | *'''Excel File:''' [[Media:20131203_IDExcelcomparison_tATK_TIGR4_AJV.xls|ID Comparison]] | ||
Revision as of 21:46, 13 December 2013
Contents |
Statement of Work
- Describe exactly what you did on the project.
Updating of Gene Database Testing Reports
- Was responsible for running counts (XMLPipeDB Match, Tally Engine, SQL)
- Performed visual inspections within gdb files
- Provided screenshots when necessary
- (Did not update GenMAPP aspects, left to Kevin)
- Compared found Gene ID formats with corresponding online resources (UniProt, RefSeq)
- Export Reports contributed to:
XML/Exception File Comparison
- first search in xmlmatch:
- searched for SP_[0-9][0-9][0-9][0-9] in uniprot file
- got 2126 match results
- saved to text file
- used excel to compare lists
- to convert match id's from SP_#### to SP####, used control F (search/replace function) to replace underscore with a 'no space'
- link to instructions for excel match comparison found here: [[4]]
- NO Matches found, all results were N/A
- Excel File: ID Comparison
- Provide references or links to artifacts of your work, such as:
- Wiki pages
- Other files or documents
- Code or scripts
Assessment of Project
- Give an objective assessment of the success of your project workflow and teamwork.
- What worked and what didn't work?
- What would you do differently if you could do it all over again?
- Evaluate the Gene Database Project and Group Report in the following areas:
- Content: What is the quality of the work?
- Organization: Comment on the organization of the project and of your group's wiki pages.
- Completeness: Did your team achieve all of the project objectives? Why or why not?
Reflection on the Process
- What did you learn?
- With your head (biological or computer science principles)
- With your heart (personal qualities and teamwork qualities that make things work or not work)?
- With your hands (technical skills)?
- What lesson will you take away from this project that you will still use a year from now?
