Difference between revisions of "Team H(oo)KD Final Project Deliverables"
From LMU BioDB 2013
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:*For data collected in presence of rifampicin: [[Media:For GenMAPP Chlamydia V4 20131212 KS Presence of Rifampicin.gex|For_GenMAPP Chlamydia_V4_20131212_KS_Presence_of_Rifampicin.gex]] | :*For data collected in presence of rifampicin: [[Media:For GenMAPP Chlamydia V4 20131212 KS Presence of Rifampicin.gex|For_GenMAPP Chlamydia_V4_20131212_KS_Presence_of_Rifampicin.gex]] | ||
*Filtered MAPPFinder Results (.xls): | *Filtered MAPPFinder Results (.xls): | ||
| + | *[[Media: EB to RB No Rif 20131207 KS DW-Criterion0-GO.xls|EB to RB No Rif Increased]] | ||
| + | *[[Media: EB to RB No Rif 20131207 KS DW-Criterion1-GO.xls|EB to RB No Rif decreased]] | ||
| + | *[[Media: MAPPFinder Results EB to RB Rifampicin 20131212-Criterion0-GO (1).xls | EB to RB Rif Increased]] | ||
| + | *[[Media:EB to RB No Rif 20131207 KS DW-Criterion1-GO.xls|EB to RB No Rif decreased]] | ||
*Sample MAPP file of a relevant biological pathway for your species (.mapp): | *Sample MAPP file of a relevant biological pathway for your species (.mapp): | ||
:*Picture of the MAPP (.jpeg): | :*Picture of the MAPP (.jpeg): | ||
*Group Report (.pdf): | *Group Report (.pdf): | ||
*PowerPoint presentation (given on Thursday, December 12): | *PowerPoint presentation (given on Thursday, December 12): | ||
Revision as of 00:27, 14 December 2013
| Project Manager/Coder: Katrina Sherbina | Quality Assurance: Hilda Delgadillo | GenMAPP User: Dillon Williams |
| Project Guidelines: | Gene Database Project | Report Guidelines | |
| Team Journal Assignments | Week 12 Status Report | Week 13 Status Report | Week 15 Status Report |
| Individual Status Reports: | HDelgadi Project Notebook | dwilliams Project Notebook | Ksherbina Project Notebook |
| Useful Links: | Class Page | Team Home Page |
| Final Product | Project Deliverables |
Deliverables
- Gene database for Chlamydia trachomatis A/HAR-13 (.gdb): Ct-Std_External_20131121.gdb
- ReadMe file including the gene database schema:ReadMe_Ct-Std_External_20131122.pdf
- Gene database testing report: Ct_External_20131121_Gene_Database_Testing_Report.pdf
- Processed and analyzed DNA microarray dataset (.xls):
- GenMAPP Expression Dataset file (.gex):
- For data collected in absence of rifampicin: For_GenMAPP_Absence_of_Rifampicin.gex
- For data collected in presence of rifampicin: For_GenMAPP Chlamydia_V4_20131212_KS_Presence_of_Rifampicin.gex
- Filtered MAPPFinder Results (.xls):
- EB to RB No Rif Increased
- EB to RB No Rif decreased
- EB to RB Rif Increased
- EB to RB No Rif decreased
- Sample MAPP file of a relevant biological pathway for your species (.mapp):
- Picture of the MAPP (.jpeg):
- Group Report (.pdf):
- PowerPoint presentation (given on Thursday, December 12):
