Gleis Week 12

Lab Journal

• Checked out code from sourceforge @ https://svn.code.sf.net/p/xmlpipedb/code
• Followed directions to configure new project wizard
• Entered name and clicked finish
• Add JDK work environment

• Window>preferences>Java

• Follow direction to build path and use as source folder
• Begin adding species profile
• src folder> edu.lmu.xmlpipedb.gmbuilder.databasetoolkit.profiles
• right click and New > Class
• enter the following:

Name: LeishmaniaMajorUniProtSpeciesProfile (no spaces, capitalizing the first letters of each word) Superclass: edu.lmu.xmlpipedb.gmbuilder.databasetoolkit.profiles.UniProtSpeciesProfile (you can also click on Browse... to navigate to this if you don’t feel like typing)

• clicked finish
• open new java file
• add constructor from Coder

• edit for Leishmania major

• Entered code for OrderedLocusNames

• Coder

Eclipse>workbench>+canister>follow coder instructions>window>

notes: use antbuild in eclipse use firstobject xml edit>find>F3

customize src>right click datbase profiles>follow coder page

Identify MOD- species pattern link

Run export and check for database update

Gleis (talk) 11:54, 14 November 2013 (PST)

Off The Leish