Team H(oo)KD Week 12 Status Report

Team H(oo)KD

Project Manager/Coder: Katrina Sherbina

Quality Assurance: Hilda Delgadillo

GenMAPP User: Dillon Williams

Project Guidelines:	Gene Database Project	Report Guidelines
Team Journal Assignments	Week 12 Status Report	Week 13 Status Report	Week 15 Status Report
Individual Status Reports:	HDelgadi Project Notebook	dwilliams Project Notebook	Ksherbina Project Notebook
Useful Links:	Class Page	Team Home Page

Final Product

Project Deliverables

Coder Status Update

• Began the gene database import export cycle:

• Downloaded the UniProt XML file for Chlamydia trachomatis serovar A strain HAR-13.
• Downloaded the GOA file for Chlamydia trachomatis' serovar A.
• I was able to import both the UniProt XML file and the GOA file for the C. trachomatis into gmbuilder-32bit.bat. While I was also able to import the OBO-XML file, I could not finish processing the data. After gmbuilder processed the 81000 term, I received the following error after which gmbuilder ceased the processing of the OBO-XML file:

ERROR edu.lmu.xmlpipedb.gmbuilder.GenMAPPBuilder  - java.util.concurrent.ExecutionException: java.lang.OutOfMemoryError:
Java heap space

• Hopefully, after consultation with Dondi, I can try to run the database import export cycle again tomorrow November 15th.

QA Status Update

• Obtaining the files GOA file, UniProt XML file, and the GO OBO-XML file were essential to obtain this week. With these files we will begin the importing and exporting of the files Friday November 15th, so we may continue with the exporting of files into the GenMAPP Gene Database next week.

HDelgadi (talk) 10:46, 14 November 2013 (PST)