Laurmagee: Week 15

Sanity Check

1. How many genes have p value < 0.05 for the time set of 15 minutes?
   • 3613 genes
2. How many genes have p value < 0.05 for the time set of 30 minutes?
   • 5225 genes
3. How many genes have p value < 0.05 for the time set of 60 minutes?
   • 5207 genes
4. How many genes have p value < 0.05 for the time set of 240 minutes?
   • 6790 genes
5. How many genes have p value < 0.01 for the time set of 15 minutes?
   • 907 genes
6. How many genes have p value < 0.01 for the time set of 30 minutes?
   • 1518 genes
7. How many genes have p value < 0.01 for the time set of 60 minutes?
   • 1553 genes
8. How many genes have p value < 0.01 for the time set of 240 minutes?
   • 2437 genes
9. How many genes have p value < 0.001 for the time set of 15 minutes?
   • 92 genes
10. How many genes have p value < 0.001 for the time set of 30 minutes?
    • 179 genes
11. How many genes have p value < 0.001 for the time set of 60 minutes?
    • 172 genes
12. How many genes have p value < 0.001 for the time set of 240 minutes?
    • 347 genes
13. How many genes have p value < 0.0001 for the time set of 15 minutes?
    • 7 genes
14. How many genes have p value < 0.0001 for the time set of 30 minutes?
    • 15 genes
15. How many genes have p value < 0.0001 for the time set of 60 minutes?
    • 13 genes
16. How many genes have p value < 0.0001 for the time set of 240 minutes?
    • 36 genes
17. Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change greater than zero. How many are there for the time set of 15 minutes?
    • 1521
18. Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change greater than zero. How many are there for the time set of 30 minutes?
    • 1926
19. Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change greater than zero. How many are there for the time set of 60 minutes?
    • 2194
20. Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change greater than zero. How many are there for the time set of 240 minutes?
    • 2846
21. Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change less than zero. How many are there for the time set of 15 minutes?
    • 2092
22. Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change less than zero. How many are there for the time set of 30 minutes?
    • 3299
23. Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change less than zero. How many are there for the time set of 60 minutes?
    • 3013
24. Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change less than zero. How many are there for the time set of 240 minutes?
    • 3944
25. What about an average log fold change of > 0.25 and p < 0.05 for the time set of 15 minutes?
    • 1476
26. What about an average log fold change of > 0.25 and p < 0.05 for the time set of 30 minutes?
    • 1890
27. What about an average log fold change of > 0.25 and p < 0.05 for the time set of 60 minutes?
    • 2129
28. What about an average log fold change of > 0.25 and p < 0.05 for the time set of 240 minutes?
    • 2763
29. Or an average log fold change of < -0.25 and p < 0.05 for the time set of 15 minutes?
    • 2052
30. Or an average log fold change of < -0.25 and p < 0.05 for the time set of 30 minutes?
    • 3256
31. Or an average log fold change of < -0.25 and p < 0.05 for the time set of 60 minutes?
    • 2942
32. Or an average log fold change of < -0.25 and p < 0.05 for the time set of 240 minutes?
    • 3866