Vkuehn Week 5

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UniProt Exercise

  • Opened and read Bioinformatics For Dummies
  • The location where Proteins end up and how they get there are unique
  • The folding and domains are very important and help determine the 3D structure
  • Searched for the protein P00533 it is an epidermal growth factor receptor
  • Here are the results:

Screen Shot 2013-09-26 at 8.53.20 PM.png

  • As new information comes out, older accession numbers don't go away, they just get stored as secondary accession numbers, but the most up to date information is only displayed
  • The comments section is very useful for gathering information about the protein such as: function, catalytic activity, tissue specificity
  • The cross-reference section is very useful for gathering other information in new databases. For example, EMBL-EBI gives a visual overview of the base pairs and other details:

First EBI database.png [[1]]

  • Here is an example of a 3D database result for the epidermal protein:

Second EBI database.png.png [[2]]

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