Team Name

Team 4

Main Paper: The composite genome of the legume symbiont Sinorhizobium meliloti. Science 293, 668–672.

Personnel

Stephen Louie

Project Manager, Quality Assurance

slouie4 at lion.lmu.edu

1 LMU Drive MSB 5194

Los Angeles, CA 90045

Lauren Magee

GenMAPP Expert

lmagee1 at lion.lmu.edu

1 LMU Drive MSB-5258,

Los Angeles, CA 90045

Mitchell Petredis

Coding Supervisor

mrpetredis at gmail dot com

mpetredi at lion dot lmu dot edu

Loyola Marymount University

1 LMU Drive MSB-5957

Los Angeles, CA 90045-2659

Miles Malefyt

GenMAPP Coordinator

milesm@malefyt.com

mmalefyt@lion.lmu.edu

8416 Campion drive

Westchester, CA 90045

cell: 831-236-5402

Mmalefyt (talk) 10:31, 31 October 2013 (PDT)

Micro Array paper

• [Osmotic upshift elicited by salt and sucrose]
  • [HTML version]
  • [PDF version]

Paper Descriptions

DNA microarrays are used to characterize the Sinorhizobium population. Three distinct DNA regions, or loci, were investigated. These three loci, called “IGSGAB”, “IGSEXO” and “IGSRKP”. The wildtypes acted as the controls while the treatment involved the use of microarray probes. No indication of replications were given.

sRNAs are used for gene expression in bacteria. sRNAs were screened for in Sinorhizobium meliloti through the use of microarray hybridizations. It was unapparent whether replications were used in the nature of this experiment.

Citations

Transcriptome Profiling Reveals the Importance of Plasmid pSymB for Osmoadaptation of Sinorhizobium meliloti. Dominguez-Ferreras, Ana; Perez-Arnedo, Rebeca; Becker, Anke; Olivares, Jose; Soto, Maria J.; Sanjuan, Juan. The Journal of Bacteriology 188(21):7617 (2006), Europe PMC 16916894

More microarray papers can be found at mpetredi Week 10