Data Information

corresponding data files to ID and sample excel file

1. GSM664117_14090187_control_Cy3_48_hr_Cy5 = control_Cy3_48hr_Cy5_1
2. GSM664117_14090181_control_Cy3_48_hr_Cy5 = control_Cy3_48hr_Cy5_2
3. GSM664116_14090193_control_Cy3_24_hr_Cy5 = control_Cy3_24hr_Cy5_1
4. GSM664116_14090175_24_hr_Cy3_control_Cy5 = 24hr_Cy3_control_Cy5_1
5. GSM664116_14090170_control_Cy3_24_hr_Cy5 = control_Cy3_24hr_Cy5_2
6. GSM664116_14087687_24_hr_Cy3_control_Cy5 = 24hr_Cy3_control_Cy5_2
7. GSM664115_14090191_control_Cy3_12_hr_Cy5 = control_Cy3_12hr_Cy5_1
8. GSM664115_14090185_control_Cy3_12_hr_Cy5 = control_Cy3_12hr_Cy5_2
9. GSM664115_14090180_12_hr_Cy3_control_Cy5 = 12hr_Cy3_control_Cy5_1
10. GSM664115_14090174_12_hr_Cy3_control_Cy5 = 12hr_Cy3_control_Cy5_2
11. GSM664115_14090168_12_hr_Cy3_control_Cy5 = 12hr_Cy3_control_Cy5_3
12. GSM664115_14087688_control_Cy3_12_hr_Cy5 = control_Cy3_12hr_Cy5_3
13. GSM664114_14090192_control_Cy3_4_hr_Cy5 = control_Cy3_4hr_Cy5_1
14. GSM664114_14090190_4_hr_Cy3_control_Cy5 = 4hr_Cy3_control_Cy5_1
15. GSM664114_14090188_4_hr_Cy3_control_Cy5 = 4hr_Cy3_control_Cy5_2
16. GSM664114_14090176_4_hr_Cy3_control_Cy5 = 4hr_Cy3_control_Cy5_3
17. GSM664114_14090169_control_Cy3_4_hr_Cy5 = control_Cy3_4hr_Cy5_2
18. GSM664114_14090167_control_Cy3_4_hr_Cy5 = control_Cy3_4hr_Cy5_3

all information data fold changes

"Pneumococcal biofilms compared to planktonic control at 4, 12, 24, 48 hours. 3 biological replicates each of 4 and 12 hour time points, and 2 biological replicates each of 24 and 48 hour time points. Flip dye (technical replicates) performed for 4, 12, and 24 hour time points; no technical replicate performed for 48 hour time point due to limiting material. Ratios were determined by averaging across technical and biological replicates. The following hybridizations made up each biological replicate: 14090167.tav.annot and 14090190.tav.annot (4hr biol rep 1); 14090169.tav.annot and 14090176.tav.annot (4hr biol rep 2); 14090192.tav.annot and 14090188.tav.annot (4hr biol rep 3); 14087688.tav.annot and 14090180.tav.annot (12hr biol rep 1); 14090185.tav.annot and 14090168.tav.annot (12hr biol rep 2); 14090191.tav.annot and 14090174.tav.annot (12hr biol rep 3); 14090170.tav.annot and 14090175.tav.annot (24hr biol rep 2); 14090193.tav.annot and 14087687.tav.annot (24hr biol rep 3); 14090181.tav.annot (48hr biol rep 1); 14090187.tav.annot (48hr biol rep 2)"

This excerpt from Array Express was the basis for determining which biological replicates were related to which technical replicates as seen in the data