Laurmagee: Week 15

Sanity Check

1. How many genes have p value < 0.05 for the time set of 15 minutes?
   • 3613 genes
2. How many genes have p value < 0.05 for the time set of 30 minutes?
   • 5225 genes
3. How many genes have p value < 0.05 for the time set of 60 minutes?
   • 5207 genes
4. How many genes have p value < 0.05 for the time set of 240 minutes?
   • 6790 genes
5. How many genes have p value < 0.01 for the time set of 15 minutes?
   • 907 genes
6. How many genes have p value < 0.01 for the time set of 30 minutes?
   • 1518 genes
7. How many genes have p value < 0.01 for the time set of 60 minutes?
   • 1553 genes
8. How many genes have p value < 0.01 for the time set of 240 minutes?
   • 2437 genes
9. How many genes have p value < 0.001 for the time set of 15 minutes?
   • 92 genes
10. How many genes have p value < 0.001 for the time set of 30 minutes?
    • 179 genes
11. How many genes have p value < 0.001 for the time set of 60 minutes?
    • 172 genes
12. How many genes have p value < 0.001 for the time set of 240 minutes?
    • 347 genes
13. How many genes have p value < 0.0001 for the time set of 15 minutes?
    • 7 genes
14. How many genes have p value < 0.0001 for the time set of 30 minutes?
    • 15 genes
15. How many genes have p value < 0.0001 for the time set of 60 minutes?
    • 13 genes
16. How many genes have p value < 0.0001 for the time set of 240 minutes?
    • 36 genes
17. Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change greater than zero. How many are there for the time set of 15 minutes?
18. Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change greater than zero. How many are there for the time set of 30 minutes?
19. Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change greater than zero. How many are there for the time set of 60 minutes?
20. Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change greater than zero. How many are there for the time set of 240 minutes?
21. Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change less than zero. How many are there for the time set of 15 minutes?
22. Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change less than zero. How many are there for the time set of 30 minutes?
23. Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change less than zero. How many are there for the time set of 60 minutes?
24. Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change less than zero. How many are there for the time set of 240 minutes?
25. What about an average log fold change of > 0.25 and p < 0.05 for the time set of 15 minutes?
26. What about an average log fold change of > 0.25 and p < 0.05 for the time set of 30 minutes?
27. What about an average log fold change of > 0.25 and p < 0.05 for the time set of 60 minutes?
28. What about an average log fold change of > 0.25 and p < 0.05 for the time set of 240 minutes?
29. Or an average log fold change of < -0.25 and p < 0.05 for the time set of 15 minutes?
30. Or an average log fold change of < -0.25 and p < 0.05 for the time set of 30 minutes?
31. Or an average log fold change of < -0.25 and p < 0.05 for the time set of 60 minutes?
32. Or an average log fold change of < -0.25 and p < 0.05 for the time set of 240 minutes?