Kevinmcgee Week 3

Genetic Code By Computer

Complementary Strand

seq_file | sed "y/actg/tagc/"

Reading Frame Codes

+1 seq_file | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed
+2 seq_file | sed "s/^.//g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed
+3 seq_file | sed "s/^..//g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed
-1 seq_file | sed "y/actg/tgac/" | rev | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed
-2 seq_file | sed "y/actg/tgac/" | rev | sed "s/^.//g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed
-3 seq_file | sed "y/actg/tgac/" | rev | sed "s/^..//g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed

Kevinmcgee (talk) 11:14, 12 September 2013 (PDT)