Mpetredi Week 3

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Compliment of a Strand

cat infA-E.coli-K12.txt | sed "y/atcg/tagc/"

Reading Frames

Positive (Forward)

  1. cat infA-E.coli-K12.txt | sed "s/t/u/g" | sed "s/.../& /g" | sed -f genetic-code.sed
  2. cat infA-E.coli-K12.txt | sed "s/^.//g" | sed "s/t/u/g" | sed "s/.../& /g" | sed -f genetic-code.sed
  3. cat infA-E.coli-K12.txt | sed "s/^..//g" | sed "s/t/u/g" | sed "s/.../& /g" | sed -f genetic-code.sed

Negative (Reverse)

  1. cat infA-E.coli-K12.txt | sed "y/atcg/uagc/" | rev | sed "s/.../& /g" | sed -f genetic-code.sed

infA-E.coli-K12.txt

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