Ksherbina Week 8

Katrina Sherbina

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Assignment Description

Week 1

Week 2

Week 3

Week 4

Week 5

Week 6

Week 7

Week 8

Week 9

Week 10

Week 11

Week 12

Week 13

Week 15

Class Journal

Week 1

Week 2

Week 3

Week 4

Week 5

Week 6

Week 7

Week 8

Week 9

Individual Journal

Week 2

Week 3

Week 4

Week 5

Week 6

Week 7

Week 8

Week 9

Week 10

Week 11

Other

Week 5: Database Wiki

Final Project

Team H(oo)KD Project Page

Journal Club Presentation

Project Individual Journal

Lab Journal: Statistical Analysis of Vibrio cholerae Microarray Data

1. Download the file Merrell_Compiled_Raw_Data_Vibrio.xls from the Sample Microarray Analysis for Vibrio cholerae page.
2. Rename the file in the following format: Merrell_Compiled_Raw_Data_Vibrio_<Initials>_<Date>.xls
3. Open the file. Insert a new worksheet and name it "scaled_centered".
4. Go back to the "compiled_raw_data" worksheet, Select All and Copy. Go to your new "scaled_centered" worksheet, click on the upper, left-hand cell (cell A1) and Paste.
5. Insert two rows in between the top row of headers and the first data row.
6. In cell A2, type "Average" and in cell A3, type "StdDev".

The resulting Excel file can be downloaded here. The text file to be used for GenMapp can be downloaded here.

Lab Journal: MAPPFinder Analysis of Vibrio cholerae Microarray Data

1. Installed GenMAPP Classic from this [page] onto my computer.
2. Downloaded the following data files: Vc-Std_External_20090622.gdb and Vc-Std_External_20101022.gdb.