Taur.vil Week 12

Week 12 Individual Journal

Lab Journal

G54

• Downloaded GM Builder 2.0b71 for my personal computer from [1]
• On my personal computer created new database in PgAdminIII titled: tATK_G54_20131113
• Ran SQL, opened gmbuilder.sql and executed
  • Produced the expect 159 tables
• Configured gmbuilder-32bit.bat to connect with the database
• Imported the XML file 20131107_UniProtXML_tATK_G54_AJV.xml which can be found on our team page.
  • Took 2.98 minutes
• Imported the goa file 20131107_UniProtXML_tATK_G54_AJV.goa (also on our team page)
  • Took 0.05 minutes
• Downloaded the compressed go-obo file 20131107_GO-OBO_tATK_KM.gz from the team page.
  • Extracted files using 7zip and imported extracted file into gmbuilder
  • Took 12.64 minutes to import and 10.63 minutes to process
• Exported file to title: 20131113_G45export_tATK_TPV.gdb
  • Took less than 2h
• Uploaded export to wiki: Media:20131113 G45export tATK TPV.gdb

R6

• Created new database in pgAdminIII titled: tATK_R6_20131113
• Ran SQL, opened gmbuilder.sql and executed
  • Produced the expect 159 tables
• Configured gmbuilder-32bit.bat to connect with the database
• Imported the XML file 20131105_UniProtXML_tATK_R6_AJV.xml which can be found on our team page.
  • Import took 5.16 minutes
• Imported go-obo file extracted during G54
  • Took 12.67min to upload and 10.06min to process.
• Imported goa file 20131107_UniProtXML_tATK_R6_AJV.goa
  • Import took 0.04min
• Exported file to 20131113_R6export_tATK_TPV.gdb
  • Took less than an hour
• Uploaded export to wiki: Media:20131113 R6export tATK TPV.gdb

By Tauras Vilgalys

As part of Biological Databases

Please Remember the Harassing of Deities is Strictly Prohibited

Never Forget Samson