Stephen Louie Project Notebook

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Contents

Week 12

11/12/2013

  • Gave presentation for Genome paper to class

11/14/2013

  • Conducted meeting with guilds. No meeting was conducted for Quality Assurance
  • Sat in on GenMAPP builder guild meeting for absent teammate
  • Downloaded and extracted data source files
    • UniProt XML
      • Followed directions provided Here
    • GOA
      • Note:Current directions were not working. Follow these instructions for your respective species
      • From Running GenMAPP Builder page, clicked on the UniProt-GOA Downloads link.
      • Was given an error message. Changed url from "ftp" to "http" at beginning.
      • Was entered, was taken to Index of/pub/database/GO/goa
      • Clicked on "proteomes" folder
      • Directed to Index of /pub/databases/GO/goa/proteomes. Downloaded 58.R_meliloti.goa
      • Note: R. meliloti is an alternative name to S. Melitoti.
    • GO OBO-XML
      • Followed directions provided Here
  • Created new database in PostgreSQL
    • Followed directions provided Here

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