Stephen Louie Project Notebook

Week 12

11/12/2013

• Gave presentation for Genome paper to class

11/14/2013

• Conducted meeting with guilds. No meeting was conducted for Quality Assurance
• Sat in on GenMAPP builder guild meeting for absent teammate
• Downloaded and extracted data source files
  • UniProt XML
    • Followed directions provided Here
  • GOA
    • Note:Current directions were not working. Follow these instructions for your respective species
    • From Running GenMAPP Builder page, clicked on the UniProt-GOA Downloads link.
    • Was given an error message. Changed url from "ftp" to "http" at beginning.
    • Was entered, was taken to Index of/pub/database/GO/goa
    • Clicked on "proteomes" folder
    • Directed to Index of /pub/databases/GO/goa/proteomes. Downloaded 58.R_meliloti.goa
    • Note: R. meliloti is an alternative name to S. Melitoti.
  • GO OBO-XML
    • Followed directions provided Here
• Created new database in PostgreSQL
  • Followed directions provided Here

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