Ajvree Week 15

12/3/13

Comparing gene id's in excel:

• first search in xmlmatch:
  • searched for SP_[0-9][0-9][0-9][0-9] in uniprot file
  • got 2126 match results
  • saved to text file
• used excel to compare lists
  • to convert match id's from SP_#### to SP####, used control F (search/replace function) to replace underscore with a 'no space'
• link to instructions for excel match comparison found here: [[1]]
• NO Matches found, all results were N/A
• Excel File: ID Comparison
  • Out of all 333 Gene ID's, none were found in original XML file, so those errors cannot be fixed

Visual Representation of Data Information

• Finished in-class 12/3/13

Compilation of Counting Totals/Visual Information

• Began word document with all visual counting results in one place
• still missing information regarding comparisons to microarray data and MOD
• File: (uploaded as pdf since wiki refused to upload it as a .doc) PDF

12/5/13

Updating of Export 4 Testing Page

• Added relevant information to Tally Engine, XMLPipeDB, Row Counts, SQL, (etc) sections.
• Reformatted images and added images previously found on Export 1 page.

Links

Alina's User Page

Kevin's User Page

Tauras's User Page

Biological Databases Class Page

Gene Database Project

Gene Database Project Report Guidelines

Streptococcus pneumoniae

Import Export Cycle 1: tATK Export One: TIGR4 Testing Report

Import Export Cycle 2: tATK E2: TIGR4 Testing Report

Import Export Cycle 3: tATK E3: TIGR4 Testing Report

Import Export Cycle 4: tATK E4: TIGR4 Testing Report

Data Information

Project Roles:

Project Manager

Coder

GenMAPP User

Quality Assurance

• Kmeilak Week 10, Kmeilak Week 11, Kmeilak Week 12, Kmeilak Week 13
• Taur.vil Week 10, Taur.vil Week 11, Taur.vil Week 12, Taur.vil Week 13, Taur.vil Week 14, Taur.vil Week 15
• Ajvree Week 10, Ajvree Week 11, Ajvree Week 12, Ajvree Week 13, Ajvree Week 14, Ajvree Week 15

Links

Alina's User Page

Kevin's User Page

Tauras's User Page

Biological Databases Class Page

Gene Database Project

Gene Database Project Report Guidelines

Streptococcus pneumoniae

Import Export Cycle 1: tATK Export One: TIGR4 Testing Report

Import Export Cycle 2: tATK E2: TIGR4 Testing Report

Import Export Cycle 3: tATK E3: TIGR4 Testing Report

Import Export Cycle 4: tATK E4: TIGR4 Testing Report

Data Information

Project Roles:

Project Manager

Coder

GenMAPP User

Quality Assurance

• Kmeilak Week 10, Kmeilak Week 11, Kmeilak Week 12, Kmeilak Week 13
• Taur.vil Week 10, Taur.vil Week 11, Taur.vil Week 12, Taur.vil Week 13, Taur.vil Week 14, Taur.vil Week 15
• Ajvree Week 10, Ajvree Week 11, Ajvree Week 12, Ajvree Week 13, Ajvree Week 14, Ajvree Week 15