https://xmlpipedb.lmucs.io/biodb/fall2015/index.php?action=history&feed=atom&title=Class_Journal_Week_2Class Journal Week 2 - Revision history2026-05-03T08:41:08ZRevision history for this page on the wikiMediaWiki 1.25.1https://xmlpipedb.lmucs.io/biodb/fall2015/index.php?title=Class_Journal_Week_2&diff=1251&oldid=prevEyanosch: Added the answers to the class journal of week 22015-09-15T06:57:13Z<p>Added the answers to the class journal of week 2</p>
<table class='diff diff-contentalign-left'>
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr style='vertical-align: top;'>
<td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 06:57, 15 September 2015</td>
</tr><tr><td colspan="2" class="diff-lineno" id="L178" >Line 178:</td>
<td colspan="2" class="diff-lineno">Line 178:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>[[User:Malverso|Malverso]] ([[User talk:Malverso|talk]]) 23:18, 14 September 2015 (PDT)</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>[[User:Malverso|Malverso]] ([[User talk:Malverso|talk]]) 23:18, 14 September 2015 (PDT)</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>----</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>----</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">===Erich Yanoschik===</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"># What is the biggest discovery that I made from these readings?</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">#* Genetic coding and computer coding are more similar than I had thought, by understanding binary coding mechanisms and associating them with DNA code we are able to more accurately depict how a cell runs the lines of code for an operation to be undertaken. One of the coolest things I found was that Marshall Nirenberg learned that had he not run into Michael Sela, who "was the only person in the world" who knew the solution polyphenylalanine dissolved in, he still might be working on the problem today. There were many people who Nirenberg credited with finding the nucleotide sequences of RNA codons and without each persons specific area of expertise this feat may have never come to fruition. </ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"># What part of the readings did I understand the least?</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">#* There were some parts in Marshall Nirenberg's "Historical review: Deciphering the genetic code - personal account" that I had trouble conceiving in my head. Charts of the experiments are incorporated throughout the text but I had trouble referencing his text and reading the slides.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"># What is the relationship between the genetic code and a computer code?</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">#* The relationship between the genetic code and computer code is that they are both languages that can be read and manipulated to produce a final product. The genetic code creates proteins and their function is determined by their structure. DNA sequences have been manipulated over time from the very first single celled mass to produce all the abundance of biomass inhabiting the planet. Computer code is responsible for all computations and programs that we utilize on a daily basis. Both computer code and genetic code breath life into the final product </ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">--[[User:Eyanosch|Eyanosch]] ([[User talk:Eyanosch|talk]]) 23:57, 14 September 2015 (PDT)</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>[[Category: Journal Entry]]</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>[[Category: Journal Entry]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>[[Category: Shared]]</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>[[Category: Shared]]</div></td></tr>
</table>Eyanoschhttps://xmlpipedb.lmucs.io/biodb/fall2015/index.php?title=Class_Journal_Week_2&diff=1250&oldid=prevRlegaspi: Fixed my response section to include all the questions.2015-09-15T06:56:52Z<p>Fixed my response section to include all the questions.</p>
<table class='diff diff-contentalign-left'>
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr style='vertical-align: top;'>
<td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 06:56, 15 September 2015</td>
</tr><tr><td colspan="2" class="diff-lineno" id="L137" >Line 137:</td>
<td colspan="2" class="diff-lineno">Line 137:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>#''What is the biggest discovery that I made from these readings?''</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>#''What is the biggest discovery that I made from these readings?''</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>#*The biggest discovery that I made from these readings that the genetic code does not cover for all living organisms on our planet and that there are variations that can be found in organelles (i.e. mitochondria) and in organisms that live in extreme environmental conditions - ''extremophiles''. ''Digital Code of Life'' by Moody was intriguing as it gave a clear comparison between DNA and computer code, which helped me visualize the relationship between the two areas of study that we are covering in this course. Relating the Moody article to my biggest discovery, I find it exciting to know that there is not a specific limit to what we know about the genetic code and a computer code since there is still room for discovery and intrigue.</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>#*The biggest discovery that I made from these readings that the genetic code does not cover for all living organisms on our planet and that there are variations that can be found in organelles (i.e. mitochondria) and in organisms that live in extreme environmental conditions - ''extremophiles''. ''Digital Code of Life'' by Moody was intriguing as it gave a clear comparison between DNA and computer code, which helped me visualize the relationship between the two areas of study that we are covering in this course. Relating the Moody article to my biggest discovery, I find it exciting to know that there is not a specific limit to what we know about the genetic code and a computer code since there is still room for discovery and intrigue.</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">#''What part of the readings did I understand the least?''</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>#*Overall, I found that the readings provided much needed review, in terms of re-familiarizing myself with the genetics, the genetic code, etc.; however, the readings also provided insights into specific concepts originating from the genetic code and relating the genetic code to computer code, which will definitely help as the class goes on. To answer the question of what parts of the readings I did not understand the most, I found that the readings from the Genomes 2nd Edition were more difficult to understand content-wise because of the various topics covered; however, the figures managed to clear up some preliminary confusion from the reading. In addition, the Kaji and Kaji article (which was more like a experimental results section of a larger experiment) was difficult to follow because of all the genetic code jargon, but I did manage to understand the fact that the authors were responding to Nirenberg's experiments and his writings.</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>#*Overall, I found that the readings provided much needed review, in terms of re-familiarizing myself with the genetics, the genetic code, etc.; however, the readings also provided insights into specific concepts originating from the genetic code and relating the genetic code to computer code, which will definitely help as the class goes on. To answer the question of what parts of the readings I did not understand the most, I found that the readings from the Genomes 2nd Edition were more difficult to understand content-wise because of the various topics covered; however, the figures managed to clear up some preliminary confusion from the reading. In addition, the Kaji and Kaji article (which was more like a experimental results section of a larger experiment) was difficult to follow because of all the genetic code jargon, but I did manage to understand the fact that the authors were responding to Nirenberg's experiments and his writings.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>#''What is the relationship between the genetic code and a computer code?''</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>#''What is the relationship between the genetic code and a computer code?''</div></td></tr>
</table>Rlegaspi
Exception encountered, of type "Error"
[4db72a76] /biodb/fall2015/index.php?action=history&feed=atom&title=Class_Journal_Week_2 Error from line 434 of /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php: Call to undefined function each()
Backtrace:
#0 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(544): DiffEngine->diag()
#1 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(344): DiffEngine->compareSeq()
#2 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(227): DiffEngine->diffLocal()
#3 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(721): DiffEngine->diff()
#4 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(886): Diff->__construct()
#5 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(802): DifferenceEngine->generateTextDiffBody()
#6 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(733): DifferenceEngine->generateContentDiffBody()
#7 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(662): DifferenceEngine->getDiffBody()
#8 /apps/xmlpipedb/biodb/fall2015/includes/FeedUtils.php(155): DifferenceEngine->getDiff()
#9 /apps/xmlpipedb/biodb/fall2015/includes/actions/HistoryAction.php(325): FeedUtils::formatDiffRow()
#10 /apps/xmlpipedb/biodb/fall2015/includes/actions/HistoryAction.php(290): HistoryAction->feedItem()
#11 /apps/xmlpipedb/biodb/fall2015/includes/actions/HistoryAction.php(130): HistoryAction->feed()
#12 /apps/xmlpipedb/biodb/fall2015/includes/actions/FormlessAction.php(43): HistoryAction->onView()
#13 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(395): FormlessAction->show()
#14 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(273): MediaWiki->performAction()
#15 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(566): MediaWiki->performRequest()
#16 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(414): MediaWiki->main()
#17 /apps/xmlpipedb/biodb/fall2015/index.php(44): MediaWiki->run()
#18 {main}