Emilysimso Week 10 - Revision history

Emilysimso: added template

2015-11-09T07:03:51Z

added template

2015-11-09T05:54:20Z

‎Chosen Paper: answered question

2015-11-08T02:47:15Z

‎Chosen Paper: answered questions

2015-11-08T02:45:30Z

‎Chosen Paper: added questions

2015-11-08T02:44:40Z

‎Chosen Paper: added questions

2015-11-08T02:40:25Z

added micro array paper info

2015-11-08T02:27:04Z

‎Chosen Paper: quick edit of ID

2015-11-08T02:26:11Z

‎Microarray: added section

← Older revision		Revision as of 07:03, 9 November 2015
Line 83:		Line 83:
	*Were replicate experiments of the "treatment" and "control" conditions conducted? Were these biological or technical replicates? How many of each?		*Were replicate experiments of the "treatment" and "control" conditions conducted? Were these biological or technical replicates? How many of each?
	**4 biological replicates of each treatment condition were performed		**4 biological replicates of each treatment condition were performed
		+
		+	{{Template: Esimso entries etc}}

@@ Line 68: / Line 68: @@
 **No
 *How many articles does this article cite?
 *How many articles cite this article?
 **3

@@ Line 76: / Line 76: @@
 **This article has mostly been used to look at the iron response of other strains or organisms. It may have been used for comparison's sake or to modify the original methodology to fit the new experiment.
 *Link to microarray data
-**Found it on FILL THIS IN
+**Found it on [https://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-15334/ ArrayExpress]
 *What experiment was performed?  What was the "treatment" and what was the "control" in the experiment?
 **Strains of ''Shewanella oneidensis'' were put under iron depletion and repletion conditions. The control would be a regular strain of the organism, while the treatments would be either increasing or decreasing the iron levels.
 *Were replicate experiments of the "treatment" and "control" conditions conducted?  Were these biological or technical replicates?  How many of each?
 **4 biological replicates of each treatment condition were performed

@@ Line 75: / Line 75: @@
 *Based on the titles and abstracts of the papers, what type of research directions have been taken now that the genome for that organism has been sequenced?
 **This article has mostly been used to look at the iron response of other strains or organisms. It may have been used for comparison's sake or to modify the original methodology to fit the new experiment.
 *What experiment was performed?  What was the "treatment" and what was the "control" in the experiment?
 **Strains of ''Shewanella oneidensis'' were put under iron depletion and repletion conditions. The control would be a regular strain of the organism, while the treatments would be either increasing or decreasing the iron levels.
 *Were replicate experiments of the "treatment" and "control" conditions conducted?  Were these biological or technical replicates?  How many of each?
 **4 biological replicates of each treatment condition were performed

← Older revision		Revision as of 02:44, 8 November 2015
Line 75:		Line 75:
	*Based on the titles and abstracts of the papers, what type of research directions have been taken now that the genome for that organism has been sequenced?		*Based on the titles and abstracts of the papers, what type of research directions have been taken now that the genome for that organism has been sequenced?
	**This article has mostly been used to look at the iron response of other strains or organisms. It may have been used for comparison's sake or to modify the original methodology to fit the new experiment.		**This article has mostly been used to look at the iron response of other strains or organisms. It may have been used for comparison's sake or to modify the original methodology to fit the new experiment.
		+	*What experiment was performed? What was the "treatment" and what was the "control" in the experiment?
		+	**Strains of ''Shewanella oneidensis'' were put under iron depletion and repletion conditions. The control would be a regular strain of the organism, while the treatments would be either increasing or decreasing the iron levels.
		+	*Were replicate experiments of the "treatment" and "control" conditions conducted? Were these biological or technical replicates? How many of each?
		+	**4 biological replicates of each treatment condition were performed

@@ Line 37: / Line 37: @@
 *PDF file from publisher [http://www.nature.com/nbt/journal/v20/n11/pdf/nbt749.pdf website]
 *Article rights: copyright owned by publisher
-*Publishing organization of article: Nature Publishing Group
+*Publishing organization of article: Nature Publishing Group, which is for profit
 *Print or online only: online only
 *Has LMU paid subscription: no
@@ Line 47: / Line 47: @@
 **Look for transcription profiling by array
 **Want a large assay number
 ===Chosen Paper===
 *Paper ID: E-GEOD-15334

@@ Line 41: / Line 41: @@
 *Has LMU paid subscription: no
-==Microarray==
+==Microarray Paper==
 *Browsed all of ArrayExpress
 *Filtered search results: Shewanella oneidensis, RNA assay, Array assay, All arrays
@@ Line 47: / Line 47: @@
 **Look for transcription profiling by array
 **Want a large assay number