https://xmlpipedb.lmucs.io/biodb/fall2015/index.php?action=history&feed=atom&title=Emilysimso_Week_15Emilysimso Week 15 - Revision history2026-04-04T20:24:39ZRevision history for this page on the wikiMediaWiki 1.25.1https://xmlpipedb.lmucs.io/biodb/fall2015/index.php?title=Emilysimso_Week_15&diff=8139&oldid=prevEmilysimso: /* Statement of Work */ paper comments2015-12-18T21:59:17Z<p><span dir="auto"><span class="autocomment">Statement of Work: </span> paper comments</span></p>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 21:59, 18 December 2015</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===Statement of Work===</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===Statement of Work===</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>I was a GenMAPP User for the group project, meaning I did the raw data analysis from the microarray experiment and worked with the program to analyze the results. I compiled the data from the repletion stage of the experiment (all of the F time points - found on my [https://xmlpipedb.cs.lmu.edu/biodb/fall2015/index.php/Emilysimso_Week_12 Week 12 page]) and then combined this data with Ron to perform the statistical analysis on the data (found on my [https://xmlpipedb.cs.lmu.edu/biodb/fall2015/index.php/Emilysimso_Week_14 Week 14 page]). I also created the file we used for [https://xmlpipedb.cs.lmu.edu/biodb/fall2015/index.php/File:UpdatedCompiledRawData_WithGenMAPP_20151210_ES_HMH.xlsx GenMAPP]. I worked with Josh to enter the data into GenMAPP and then worked with Ron to figure out the criteria for significance of the [https://xmlpipedb.cs.lmu.edu/biodb/fall2015/index.php/File:MAPPFINDER_20151212-Criterion0-GO_20151212_HMH.xlsx increased] and [https://xmlpipedb.cs.lmu.edu/biodb/fall2015/index.php/File:MAPPFINDER_20151212-Criterion1-GO_20151212_HMH.xlsx decreased] genes. I also created the MAPPs for the [https://xmlpipedb.cs.lmu.edu/biodb/fall2015/index.php/File:Fatty_Acid_Degradation_Soneidensis_20151213_HMH.mapp Fatty Acid Degradation] and [https://xmlpipedb.cs.lmu.edu/biodb/fall2015/index.php/File:Ribosomal_Soneidensis_20151213_HMH.mapp Ribosome] gene pathways, as well as the compiled [https://xmlpipedb.cs.lmu.edu/biodb/fall2015/index.php/File:Fatty_Acid_Degradation_Compiled_20151216_HMH.PNG Fatty Acid Degradation] and [https://xmlpipedb.cs.lmu.edu/biodb/fall2015/index.php/File:Compiled_Ribosome_Image_20151216_HMH.PNG Ribosome] pathways. Finally, I created the [https://xmlpipedb.cs.lmu.edu/biodb/fall2015/index.php/File:Experimental_Design_Flow_Chart_20151115_HMH.pptx experimental design flow chart].</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>I was a GenMAPP User for the group project, meaning I did the raw data analysis from the microarray experiment and worked with the program to analyze the results. I compiled the data from the repletion stage of the experiment (all of the F time points - found on my [https://xmlpipedb.cs.lmu.edu/biodb/fall2015/index.php/Emilysimso_Week_12 Week 12 page]) and then combined this data with Ron to perform the statistical analysis on the data (found on my [https://xmlpipedb.cs.lmu.edu/biodb/fall2015/index.php/Emilysimso_Week_14 Week 14 page]). I also created the file we used for [https://xmlpipedb.cs.lmu.edu/biodb/fall2015/index.php/File:UpdatedCompiledRawData_WithGenMAPP_20151210_ES_HMH.xlsx GenMAPP]. I worked with Josh to enter the data into GenMAPP and then worked with Ron to figure out the criteria for significance of the [https://xmlpipedb.cs.lmu.edu/biodb/fall2015/index.php/File:MAPPFINDER_20151212-Criterion0-GO_20151212_HMH.xlsx increased] and [https://xmlpipedb.cs.lmu.edu/biodb/fall2015/index.php/File:MAPPFINDER_20151212-Criterion1-GO_20151212_HMH.xlsx decreased] genes. I also created the MAPPs for the [https://xmlpipedb.cs.lmu.edu/biodb/fall2015/index.php/File:Fatty_Acid_Degradation_Soneidensis_20151213_HMH.mapp Fatty Acid Degradation] and [https://xmlpipedb.cs.lmu.edu/biodb/fall2015/index.php/File:Ribosomal_Soneidensis_20151213_HMH.mapp Ribosome] gene pathways, as well as the compiled [https://xmlpipedb.cs.lmu.edu/biodb/fall2015/index.php/File:Fatty_Acid_Degradation_Compiled_20151216_HMH.PNG Fatty Acid Degradation] and [https://xmlpipedb.cs.lmu.edu/biodb/fall2015/index.php/File:Compiled_Ribosome_Image_20151216_HMH.PNG Ribosome] pathways. Finally, I created the [https://xmlpipedb.cs.lmu.edu/biodb/fall2015/index.php/File:Experimental_Design_Flow_Chart_20151115_HMH.pptx experimental design flow chart].</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">I also wrote the vast majority of the paper, compiled all of the tables and figures, and led the group for this portion.</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===Assessment of Project===</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===Assessment of Project===</div></td></tr>
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