Emilysimso Week 4 - Revision history

Emilysimso: Added template

2015-09-26T22:41:31Z

Added template

Emilysimso: Answered question 3

2015-09-26T22:18:27Z

Answered question 3

Emilysimso: Answered question 2

2015-09-26T22:12:32Z

Answered question 2

← Older revision		Revision as of 22:41, 26 September 2015
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	* Entered answer from Question 2 into type-able space		* Entered answer from Question 2 into type-able space
	* Resulting sequence: G Q V - C H H Y G V S - S T T G F F C Y N F T F H G K N F A T D Y G T R R I S I F C Q C T N D V C R G H F T R F - C R R R T A R C F T D N L T G A C W T R F R R N R R H Q R L T K W R T T R F S F L L I F Q P N W P E K -		* Resulting sequence: G Q V - C H H Y G V S - S T T G F F C Y N F T F H G K N F A T D Y G T R R I S I F C Q C T N D V C R G H F T R F - C R R R T A R C F T D N L T G A C W T R F R R N R R H Q R L T K W R T T R F S F L L I F Q P N W P E K -
		+
		+	{{Template: Esimso entries etc}}

← Older revision		Revision as of 22:18, 26 September 2015
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	* Used sed "y/atcg/uagc/"		* Used sed "y/atcg/uagc/"
	* Resulting sequence: ggccaaguuuaaugccaucacuauggggucuccuaaucuacuaccgguuucuucuguuauaacuuuacguuccauggcaagaacuuugcaacggauuaugguacaaggcgcaucucaaucuuuugccagugcaccaaugacguguguagaggccauuuuacgcguuuuugauguaggcguaggacugcccgcuguuucacugacaacuugacuggggcaugcuggacucguuuccggcguaacagaaggcaucagcgacuaacaaaauggcggacuacccgcuucucuuucuugcucauuuuccagccaaauuggccggaaaaauaa		* Resulting sequence: ggccaaguuuaaugccaucacuauggggucuccuaaucuacuaccgguuucuucuguuauaacuuuacguuccauggcaagaacuuugcaacggauuaugguacaaggcgcaucucaaucuuuugccagugcaccaaugacguguguagaggccauuuuacgcguuuuugauguaggcguaggacugcccgcuguuucacugacaacuugacuggggcaugcuggacucguuuccggcguaacagaaggcaucagcgacuaacaaaauggcggacuacccgcuucucuuucuugcucauuuuccagccaaauuggccggaaaaauaa
		+
		+	==Question 3==
		+	* Used "sed "s/.../ & /g" to separate the sequence from Question 2 into codons
		+	* Added sed -f genetic-code.sed
		+	* Entered answer from Question 2 into type-able space
		+	* Resulting sequence: G Q V - C H H Y G V S - S T T G F F C Y N F T F H G K N F A T D Y G T R R I S I F C Q C T N D V C R G H F T R F - C R R R T A R C F T D N L T G A C W T R F R R N R R H Q R L T K W R T T R F S F L L I F Q P N W P E K -

@@ Line 27: / Line 27: @@
 * Used sed "s/gcctttttatt/&<\/terminator>/g" to mark the end of the terminator
- Final command: sed "s/cattat/<minus10box>&<\/minus10box>/g" infA-E.coli-K12.txt | sed "s/tttact/<minus35box>&<\/minus35box>/g" | sed -r "s/<\/minus10box>.{5}/&<\/tss>/g" | sed "s/<\/tss>/<tss>c&/g" | sed "s/gagg/<rbs>&<\/rbs>/g" | sed -r "s/<\/rbs>.{8}/&<\/start_codon>/g" | sed "s/<\/start_codon>/<startcodon>atg&/g" | sed "1s/tga/<stop_codon>&<\/stop_codon>/3" | sed "s/aaaaggt/<terminator>&/g" | sed "s/gcctttttatt/&<\/terminator>/g"
+* Final command: sed "s/cattat/<minus10box>&<\/minus10box>/g" infA-E.coli-K12.txt | sed "s/tttact/<minus35box>&<\/minus35box>/g" | sed -r "s/<\/minus10box>.{5}/&<\/tss>/g" | sed "s/<\/tss>/<tss>c&/g" | sed "s/gagg/<rbs>&<\/rbs>/g" | sed -r "s/<\/rbs>.{8}/&<\/start_codon>/g" | sed "s/<\/start_codon>/<startcodon>atg&/g" | sed "1s/tga/<stop_codon>&<\/stop_codon>/3" | sed "s/aaaaggt/<terminator>&/g" | sed "s/gcctttttatt/&<\/terminator>/g"
- Final result: ttttcaccacaagaatgaatgttttcggcacatttctccccagagtgttataattgcggtcgcagagttggttacgctcattaccccgctgccgataaggaatttttcgcgtcaggtaacgcccatcgtttatctcaccgctcccttatacgttgcgcttttggtgcggcttagccgtgtgttttcggagtaatgtgccgaacctgtttgttgcgatttagcgcgcaaatc<minus35box>tttact</minus35box>tatttacagaacttcgg<minus10box>cattat</minus10box>cttgc<tss>c</tss>cggttcaaattacggtagtgatacccca<rbs>gagg</rbs>attagatg<startcodon>atg</start_codon>gccaaagaagacaatat<stop_codon>tga</stop_codon>aatgcaaggtaccgttcttgaaacgttgcctaataccatgttccgcgtagagttagaaaacggtcacgtggttactgcacacatctccggtaaaatgcgcaaaaactacatccgcatcctgacgggcgacaaagtgactgttgaactgaccccgtacgacctgagcaaaggccgcattgtcttccgtagtcgctgattgttttaccgcctgatgggcgaagagaaagaacgagt<terminator>aaaaggtcggtttaaccggcctttttatt</terminator>ttat
+* Final result: ttttcaccacaagaatgaatgttttcggcacatttctccccagagtgttataattgcggtcgcagagttggttacgctcattaccccgctgccgataaggaatttttcgcgtcaggtaacgcccatcgtttatctcaccgctcccttatacgttgcgcttttggtgcggcttagccgtgtgttttcggagtaatgtgccgaacctgtttgttgcgatttagcgcgcaaatc<minus35box>tttact</minus35box>tatttacagaacttcgg<minus10box>cattat</minus10box>cttgc<tss>c</tss>cggttcaaattacggtagtgatacccca<rbs>gagg</rbs>attagatg<startcodon>atg</start_codon>gccaaagaagacaatat<stop_codon>tga</stop_codon>aatgcaaggtaccgttcttgaaacgttgcctaataccatgttccgcgtagagttagaaaacggtcacgtggttactgcacacatctccggtaaaatgcgcaaaaactacatccgcatcctgacgggcgacaaagtgactgttgaactgaccccgtacgacctgagcaaaggccgcattgtcttccgtagtcgctgattgttttaccgcctgatgggcgaagagaaagaacgagt<terminator>aaaaggtcggtttaaccggcctttttatt</terminator>ttat