GENialOMICS - Revision history

Vpachec3: /* Individual Goals and Progress */ added mapp file to table

2015-12-15T07:32:16Z

‎Individual Goals and Progress: added mapp file to table

Blitvak: added files for the week

2015-12-15T07:01:45Z

added files for the week

Blitvak: added slides

2015-12-15T06:52:07Z

added slides

Anuvarsh: /* Individual Goals and Progress */ added final bits of progress

2015-12-15T00:06:46Z

‎Individual Goals and Progress: added final bits of progress

Anuvarsh: /* Individual Goals and Progress */ updated anu's progress

2015-12-15T00:05:53Z

‎Individual Goals and Progress: updated anu's progress

Anuvarsh: /* Group Deliverables */ removed this section

2015-12-15T00:04:06Z

‎Group Deliverables: removed this section

Vpachec3: /* Week 15 */ added goals and progress

2015-12-15T00:02:49Z

‎Week 15: added goals and progress

Anuvarsh: /* Other Progress */ added link to final presentation

2015-12-14T23:59:48Z

‎Other Progress: added link to final presentation

Blitvak: added goals/progress, deliverables link

2015-12-14T05:32:01Z

added goals/progress, deliverables link

Kwyllie: Updated goals and progress.

2015-12-13T00:40:21Z

Updated goals and progress.

@@ Line 414: / Line 414: @@
 |<!--Veronica-->
 *[[Media:BioDB_Final_Presentation_GEN_20151214.pdf| Final Presentation Slides (.pdf)]]
 |<!--Kevin-->
 * Generated sanity check table.
 * Upload deliverables.
 *[[Media:BioDB_Final_Presentation_GEN_20151214.pdf| Final Presentation Slides (.pdf)]]
 |}

@@ Line 376: / Line 376: @@
 * Checked new build of GenMAPP builder
 * Realized why the UniProt count of 6994 is so different from the one reported by our database (difference between protein entry/gene name)
 |<!--Veronica-->
 * Finished example MAPP (decided do chose one pathway, oxidative phosphorylation).
@@ Line 401: / Line 404: @@
 !scope="row"|'''Files Used/Created'''
 |<!--Anu-->
-[[Media:ReadMe_Bc-Std_GEN_Build4_20151204.doc.zip | readMe_Bc-Std_GEN_Build4_20151204.doc.zip]] <br>
+*[[Media:ReadMe_Bc-Std_GEN_Build4_20151204.doc.zip | readMe_Bc-Std_GEN_Build4_20151204.doc.zip]] <br>
-[[Media:gmbuilder-genialomics-20151210-build-5.zip | gmbuilder-genialomics-20151210-build-5.zip]]<br>
+*[[Media:gmbuilder-genialomics-20151210-build-5.zip | gmbuilder-genialomics-20151210-build-5.zip]]<br>
-[[Media:Genialomics-DatabaseSchema-20151211.pdf | Genialomics-DatabaseSchema-20151211.pdf]]
+*[[Media:Genialomics-DatabaseSchema-20151211.pdf | Genialomics-DatabaseSchema-20151211.pdf]]
-[[Media:BioDB_Final_Presentation_GEN_20151214.pdf| Final Presentation Slides (.pdf)]]
+*[[Media:BioDB_Final_Presentation_GEN_20151214.pdf| Final Presentation Slides (.pdf)]]
 |<!--Brandon-->
-[[Media:BioDB_Final_Presentation_GEN_20151214.pdf| Final Presentation Slides (.pdf)]]
+*[[Media:ReadMe Bc-Std GEN Build4 20151214 final.pdf| Final Readme]]
 |<!--Veronica-->
-[[Media:BioDB_Final_Presentation_GEN_20151214.pdf| Final Presentation Slides (.pdf)]]
+*[[Media:BioDB_Final_Presentation_GEN_20151214.pdf| Final Presentation Slides (.pdf)]]
 |<!--Kevin-->
 * Generated sanity check table.
 * Upload deliverables.
-[[Media:BioDB_Final_Presentation_GEN_20151214.pdf| Final Presentation Slides (.pdf)]]
+*[[Media:BioDB_Final_Presentation_GEN_20151214.pdf| Final Presentation Slides (.pdf)]]
 |}

@@ Line 404: / Line 404: @@
 [[Media:gmbuilder-genialomics-20151210-build-5.zip | gmbuilder-genialomics-20151210-build-5.zip]]<br>
 [[Media:Genialomics-DatabaseSchema-20151211.pdf | Genialomics-DatabaseSchema-20151211.pdf]]
 |<!--Brandon-->
 |<!--Veronica-->
 |<!--Kevin-->
 * Generated sanity check table.
 * Upload deliverables.
 |}

@@ Line 370: / Line 370: @@
 * Contributed to final presentation and practiced speaking.
 * Began drafting final report of findings from this project.
 |<!--Brandon-->
 * Checked final export: everything appears in order

@@ Line 367: / Line 367: @@
 !scope="row"|'''Progress'''
 |<!--Anu-->
-* Created a new build to fix problem in TallyEngine
+* Created a new build to fix problem in TallyEngine.
 |<!--Brandon-->
 * Checked final export: everything appears in order

@@ Line 413: / Line 413: @@
 =Deliverables=
 *See [[GENialOMICS Deliverables|GENialOMICS Deliverables]]
 =''Burkholderia cenocepacia'' Genome Paper=
 '''Holden, M. T. G., Seth-Smith, H. M. B., Crossman, L. C., Sebaihia, M., Bentley, S. D., Cerdeño-Tárraga, A. M., … Parkhill, J. (2009). The Genome of Burkholderia cenocepacia J2315, an Epidemic Pathogen of Cystic Fibrosis Patients  . Journal of Bacteriology, 191(1), 261–277. http://doi.org/10.1128/JB.01230-08'''

← Older revision		Revision as of 23:59, 14 December 2015
Line 393:		Line 393:

	==Other Progress==		==Other Progress==
		+	* On December 14, 2015, GENialOMICS completed a presentation summarizing their methods and findings.
		+	** [[Media:Genialomics-BioDBFinalPresentation.pdf \| GENialOMICS Final Presentation]]

	=Deliverables=		=Deliverables=

@@ Line 345: / Line 345: @@
 * Start paper
 |<!--Brandon-->
 |<!--Veronica-->
 ''Work with Kevin Wyllie''
@@ Line 359: / Line 364: @@
 * Created a new build to fix problem in TallyEngine
 |<!--Brandon-->
 |<!--Veronica-->
 |<!--Kevin-->
@@ Line 387: / Line 395: @@
 =Deliverables=
 === Group Deliverables ===
 * GenMAPP Gene Database for assigned species (''.gdb'')
 * ReadMe file to accompany the Gene Database (''.pdf'')