Jwoodlee: /* Part 2 Procedure */ added answer clarification

2015-10-27T06:33:11Z

‎Part 2 Procedure: added answer clarification

Jwoodlee: /* Part 2 Procedure */ added clarification in an answer

2015-10-27T06:23:10Z

‎Part 2 Procedure: added clarification in an answer

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 I made a copy of the criterion file and opened it up in excel, which put the data in MAPPFinder in tabular excel form.
-There are rows of information that give the background information on how MAPPFinder made the calculations. I compared this information with my partner who used a different version of the Vibrio Gene Database.
+There are rows of information that give the background information on how MAPPFinder made the calculations. I compared this information with Lena's who used a different version of the Vibrio Gene Database.
 *Which numbers are different? Why are they different?
 **Numbers different: 565 probes meeting the filter linked to a UniProt ID., 330 genes meeting the criterion linked to a GO term., 5100 Probes linked to a UniProt ID., 2475 Genes linked to a GO term.,The z score is based on an N of 2475 and a R of 330 distinct genes in the GO.  These were the rows that were different.  Based on this I would say that the database I am using has more genes and is the more updated version of the database.

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 Compare your list with your partner who used a different version of the Gene Database. Are your terms the same or different? Why do you think that is?
-*The terms are different.  Like before, I would say that either the exact strings associated with the gene ontologies have changed, or my database is more updated.
+*Due to a miscommunication Mahrad did 2009 increase so for this one problem I compared to Lena's data.  The terms are different.  Like before, I would say that either the exact strings associated with the gene ontologies have changed, or my database is more updated.
 *List the GO terms associated with each of those genes in your individual journal. (Note: they might not all be found.) Are they the same as your partner who is using a different Gene Database? Why or why not?