Kevin Wyllie Week 10 - Revision history

Kwyllie: Added my good practice stuff.

2015-11-10T06:20:33Z

Added my good practice stuff.

Kwyllie: Syntax fix.

2015-11-10T05:57:07Z

Syntax fix.

Kwyllie: Finished my bibliography.

2015-11-10T05:56:04Z

Finished my bibliography.

Kwyllie: Added to my bibliography entries.

2015-11-10T05:52:10Z

Added to my bibliography entries.

Kwyllie: Added the bibliographic entry for my genome paper.

2015-11-10T05:48:11Z

Added the bibliographic entry for my genome paper.

Kwyllie: Fixed a bibliography entry.

2015-11-09T23:36:49Z

Fixed a bibliography entry.

Kwyllie: Added the link to the data for my microarray paper.

2015-11-09T19:46:44Z

Added the link to the data for my microarray paper.

Kwyllie: Added to my first bibliography entry.

2015-11-08T23:18:33Z

Added to my first bibliography entry.

← Older revision		Revision as of 06:20, 10 November 2015
Line 104:		Line 104:

	''Note: though there were ample entries for this organism in ArrayExpress, their corresponding articles could not be found, and were often not cited in ArrayExpress.''		''Note: though there were ample entries for this organism in ArrayExpress, their corresponding articles could not be found, and were often not cited in ArrayExpress.''
		+
		+
		+	== Links ==
		+
		+	{{Template:KwyllieJournalLinks}}
		+	[[Category:Journal Entry]]

@@ Line 78: / Line 78: @@
 * Availability: In print, online.
 * Did LMU pay a fee for this article: Presumably, no. The article is available on PubMed.
-** This article has been cited 468 times across all databases, and 128 times within the Web of Science Core Collection.
+* This article has been cited 468 times across all databases, and 128 times within the Web of Science Core Collection.
-** This article cites 150 other articles.
+* This article cites 150 other articles.
 * This organism's potential antibiotic resistance, as well as the mechanisms that mediate it, seem to be of interest to the scientific community. This is probably because ''Burkholderia cenocepacia'' is a known pathogen, commonly infecting cystic fibrosis patients.

@@ Line 99: / Line 99: @@
 * Availability:  Article does not initially appear to be available in print, however, BioMedCentral's website mentions that "high quality, bound reprints" can be purchased for any published article.
 * Did LMU pay a fee for this article: No - open access.
-#* This article cites 64 other articles.
+* This article cites 64 other articles.
-#* This article has been cited by 29 other articles (across all databases).
+* This article has been cited by 29 other articles (across all databases).
-#* The scientific community seems to be particularly interested in this organism's antimicrobial resistance, probably because this is a known pathogen, particularly relevant in the context of cystic fibrosis.
+* The scientific community seems to be particularly interested in this organism's antimicrobial resistance, probably because this is a known pathogen, particularly relevant in the context of cystic fibrosis.

@@ Line 68: / Line 68: @@
 == Annotated Bibliography ==
 Holden, M. T. G. ''et al.'' (2009). The Genome of Burkholderia cenocepacia J2315, an Epidemic Pathogen of Cystic Fibrosis Patients. ''Journal of Bacteriology'', 191(1), 261–277. doi: 10.1128/JB.01230-08
 * PubMed Abstract:  http://www.ncbi.nlm.nih.gov/pubmed/18931103
@@ Line 77: / Line 78: @@
 * Availability: In print, online.
 * Did LMU pay a fee for this article: Presumably, no. The article is available on PubMed.
 Sass, A., Marchbank, A., Tullis, E., LiPuma, J. J., & Mahenthiralingam, E. (2011) Spontaneous and evolutionary changes in the antibiotic resistance of Burkholderia cenocepacia observed by global gene expression analysis. ''BMC genomics'', 12(1), 373. doi:10.1186/1471-2164-12-373
@@ Line 93: / Line 99: @@
 * Availability:  Article does not initially appear to be available in print, however, BioMedCentral's website mentions that "high quality, bound reprints" can be purchased for any published article.
 * Did LMU pay a fee for this article: No - open access.

← Older revision		Revision as of 05:48, 10 November 2015
Line 67:		Line 67:

	== Annotated Bibliography ==		== Annotated Bibliography ==
		+
		+	Holden, M. T. G. ''et al.'' (2009). The Genome of Burkholderia cenocepacia J2315, an Epidemic Pathogen of Cystic Fibrosis Patients. ''Journal of Bacteriology'', 191(1), 261–277. doi: 10.1128/JB.01230-08
		+	* PubMed Abstract: http://www.ncbi.nlm.nih.gov/pubmed/18931103
		+	* PubMed Central: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2612433/
		+	* Publisher Full Text (HTML): http://jb.asm.org/content/191/1/261.full
		+	* Publisher Full Text (PDF): http://jb.asm.org/content/191/1/261.full.pdf+html
		+	* Copyright: Journal of Bacteriology. Neither the article page nor ASM's "About ASM" page indicates whether or not they use OpenAccess, but they do refer to themselves as an "inclusive organization," so I would hope that they do.
		+	* Publisher: American Society for Microbiology, a scientific society.
		+	* Availability: In print, online.
		+	* Did LMU pay a fee for this article: Presumably, no. The article is available on PubMed.

	Sass, A., Marchbank, A., Tullis, E., LiPuma, J. J., & Mahenthiralingam, E. (2011) Spontaneous and evolutionary changes in the antibiotic resistance of Burkholderia cenocepacia observed by global gene expression analysis. ''BMC genomics'', 12(1), 373. doi:10.1186/1471-2164-12-373		Sass, A., Marchbank, A., Tullis, E., LiPuma, J. J., & Mahenthiralingam, E. (2011) Spontaneous and evolutionary changes in the antibiotic resistance of Burkholderia cenocepacia observed by global gene expression analysis. ''BMC genomics'', 12(1), 373. doi:10.1186/1471-2164-12-373

@@ Line 74: / Line 74: @@
 ** Treatment: ET12 outbreak isolates, described as "pan-resistant"
 * Three biological replicates were used for each experiment.
-* The data does not appear to be directly linked from the article itself, however both the raw and processed data files are available in the [https://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-2747/files/ ArrayExpress entry].
+* The raw data does not appear to be directly linked from the article itself. The supplement includes a summary spreadsheet, which only displays values for fold-changes that were statistically significant. However both the raw and processed data files are available on the [https://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-2747/files/ ArrayExpress entry].
 * PubMed Abstract:  http://www.ncbi.nlm.nih.gov/pubmed/21781329
 * PubMed Central:  http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3155924/
@@ Line 82: / Line 82: @@
 * Publisher:  BioMedCentral, respected Open Access organization.
 * Availability:  Article does not initially appear to be available in print, however, BioMedCentral's website mentions that "high quality, bound reprints" can be purchased for any published article.
 * Did LMU pay a fee for this article: No - open access.
-−
-−
-Microarray: "E-MEXP-2747 - Changes in the antibiotic resistance of Burkholderia cenocepacia observed by global gene expression analysis"