Kevin Wyllie Week 12 - Revision history

Kwyllie: Added good practice links.

2015-11-24T04:45:40Z

Added good practice links.

2015-11-24T04:43:03Z

Added to electronic lab notebook.

2015-11-24T04:08:57Z

Added to electronic lab notebook.

@@ Line 41: / Line 41: @@
 # ''Note: We are not sure how to move on, as computing the T statistic calls for the number of replicates, however, the number of replicates between treated and untreated samples are different (3 and 5, respectively). We will stop here and consult professors regarding how to continue with statistical analysis.''
-=== To Do ===
+=== Links ===
-* Begin statistical analysis.
-* Upload spreadsheet.
+{{Template:GÉNialOMICS}}
-* Add good-practice content/links.
+{{Template:KwyllieJournalLinks}}

@@ Line 27: / Line 27: @@
 # The scaled/centered log ratios were then computed.
 #* The following command was entered into cell J6: <code>=(B6-B$4)/B$5</code>. This takes the first log ratio for sample Biofilm_1, subtracts the average log ratio, and divides by the standard deviation of the log ratios. This function was then pasted for the remaining data, using the drag feature. The placement of the <code>$</code>'s ensures that the cell references for the averages and standard deviations ''will'' change horizontally (to account for different averages/stdev's between samples), but ''will not'' change vertically.
 === To Do ===

@@ Line 19: / Line 19: @@
 #* All content from the "genename_logratio" sheet was pasted into the "compiled_raw_data" sheet.
 #* Finally, a new row was inserted under the header row. These row was titled "ExpName". The purpose of this row is to indicate what kind of cells were used for the corresponding experiment. Cells B2-F2 contain "Biofilm" as these columns correspond to experiments using biofilm cells that were ''not'' treated with tobramycin (125_1, 125_2, 125_3, 125_4, 126_1). Cells G2-I2 contained "Tobramycin" as these columns correspond to experiments using biofilm cells that were treated with tobramycin (126_2, 126_3, 126_4).
 === To Do ===