Lenaolufson Week 10 - Revision history

Lenaolufson: added template

2015-11-10T07:15:45Z

added template

2015-11-10T07:14:55Z

linked to my user page

2015-11-10T07:13:24Z

‎Journal Article Bibliographic Entry 2: answered journal entry 2 q's

2015-11-10T06:20:13Z

‎Journal Article Bibliographic Entry 1: answered q's at end for journal article

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 **When I went to the Samples and Data page from the ArrayExpress abstract page, there were 56 results that appeared in the table. There were five different strain names and four different organisms used, with some wild types included as well.
+{{Lenaolufson}}
 [[Category:Assignment]]
 [[Category:Group Projects]]

← Older revision		Revision as of 07:14, 10 November 2015
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	== Overview ==		== Overview ==

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 *Link to where the microarray data resides: https://www.ebi.ac.uk/arrayexpress/experiments/E-TABM-29/?keywords=&organism=Bordetella+pertussis&exptype%5B%5D=%22rna+assay%22&exptype%5B%5D=%22array+assay%22&array=
 *What experiment was performed?  What was the "treatment" and what was the "control" in the experiment?
-**
+**This study compared strains and species of Bordetella and studied their spectrum of gene expression states. The experiment consisted of a series of steps of labeling, nucleic acid extraction, labeling, bioassay data transformation, growing, specifying biomaterial action, and combining into a pool. There were wild types used in this experiment on the various strains.
 *Were replicate experiments of the "treatment" and "control" conditions conducted?  Were these biological or technical replicates?  How many of each?
-**
+**When I went to the Samples and Data page from the ArrayExpress abstract page, there were 56 results that appeared in the table. There were five different strain names and four different organisms used, with some wild types included as well.
 [[Category:Assignment]]
 [[Category:Group Projects]]

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 *Link to where the microarray data resides: https://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3263/?keywords=&organism=Bordetella+pertussis&exptype%5B%5D=%22rna+assay%22&exptype%5B%5D=%22array+assay%22&array=
 *What experiment was performed?  What was the "treatment" and what was the "control" in the experiment?
-**
+**The experiment that was performed in this study examined the changes of the full genome sequence of B. pertussis in response to iron starvation conducted in vitro. The treatment of the experiment was normalized bacterial suspension prepared form iron-repleted and iron-depleted SS cultures. These cultures were incubated with rabbit RBC and then analyzed throughout the experiment. The controls of the experiment were hemoglobin released in the absence of bacteria and by hypotonic lysis of rabbit RBC using water.
 *Were replicate experiments of the "treatment" and "control" conditions conducted?  Were these biological or technical replicates?  How many of each?
-**
+**According to the array express abstract links there were 56 results for the Samples and Data, however there were only two different source names that appeared but there were many entries for both.
 ===Journal Article Bibliographic Entry 2===