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		<id>https://xmlpipedb.lmucs.io/biodb/fall2015/index.php?action=history&amp;feed=atom&amp;title=Lenaolufson_Week_14</id>
		<title>Lenaolufson Week 14 - Revision history</title>
		<link rel="self" type="application/atom+xml" href="https://xmlpipedb.lmucs.io/biodb/fall2015/index.php?action=history&amp;feed=atom&amp;title=Lenaolufson_Week_14"/>
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		<updated>2026-04-06T20:26:26Z</updated>
		<subtitle>Revision history for this page on the wiki</subtitle>
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	<entry>
		<id>https://xmlpipedb.lmucs.io/biodb/fall2015/index.php?title=Lenaolufson_Week_14&amp;diff=7475&amp;oldid=prev</id>
		<title>Lenaolufson: added links</title>
		<link rel="alternate" type="text/html" href="https://xmlpipedb.lmucs.io/biodb/fall2015/index.php?title=Lenaolufson_Week_14&amp;diff=7475&amp;oldid=prev"/>
				<updated>2015-12-08T07:05:05Z</updated>
		
		<summary type="html">&lt;p&gt;added links&lt;/p&gt;
&lt;table class=&#039;diff diff-contentalign-left&#039;&gt;
				&lt;col class=&#039;diff-marker&#039; /&gt;
				&lt;col class=&#039;diff-content&#039; /&gt;
				&lt;col class=&#039;diff-marker&#039; /&gt;
				&lt;col class=&#039;diff-content&#039; /&gt;
				&lt;tr style=&#039;vertical-align: top;&#039;&gt;
				&lt;td colspan=&#039;2&#039; style=&quot;background-color: white; color:black; text-align: center;&quot;&gt;← Older revision&lt;/td&gt;
				&lt;td colspan=&#039;2&#039; style=&quot;background-color: white; color:black; text-align: center;&quot;&gt;Revision as of 07:05, 8 December 2015&lt;/td&gt;
				&lt;/tr&gt;&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot; id=&quot;L1&quot; &gt;Line 1:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 1:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;+&lt;/td&gt;&lt;td style=&quot;color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;font-weight: bold; text-decoration: none;&quot;&gt;[[User:Lenaolufson | Lena Olufson]]&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;+&lt;/td&gt;&lt;td style=&quot;color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;font-weight: bold; text-decoration: none;&quot;&gt;*Link to team page: https://xmlpipedb.cs.lmu.edu/biodb/fall2015/index.php/The_Class_Whoopers&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&#039;diff-marker&#039;&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;==12/1/15==&lt;/div&gt;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;==12/1/15==&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&#039;diff-marker&#039;&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;*I followed the protocol given by Dr. Dahlquist left on my talk page to perform the correct steps for editing the excel data sheet. The protocol is as follows:&lt;/div&gt;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;*I followed the protocol given by Dr. Dahlquist left on my talk page to perform the correct steps for editing the excel data sheet. The protocol is as follows:&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot; id=&quot;L87&quot; &gt;Line 87:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 89:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&#039;diff-marker&#039;&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;* I copied column F and used Paste special &amp;gt; Paste values to paste it into the next column on the right of my &amp;quot;statistics&amp;quot; sheet.&lt;/div&gt;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;* I copied column F and used Paste special &amp;gt; Paste values to paste it into the next column on the right of my &amp;quot;statistics&amp;quot; sheet.&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&#039;diff-marker&#039;&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;&amp;#039;&amp;#039;&amp;#039;Here is the most updated excel data sheet at this point in time: [[File:Bpertussis CompiledRawData MS2015-3.xlsx]]&amp;#039;&amp;#039;&amp;#039;&lt;/div&gt;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;&amp;#039;&amp;#039;&amp;#039;Here is the most updated excel data sheet at this point in time: [[File:Bpertussis CompiledRawData MS2015-3.xlsx]]&amp;#039;&amp;#039;&amp;#039;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;+&lt;/td&gt;&lt;td style=&quot;color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;font-weight: bold; text-decoration: none;&quot;&gt;&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;+&lt;/td&gt;&lt;td style=&quot;color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;font-weight: bold; text-decoration: none;&quot;&gt;{{Lenaolufson}}&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;+&lt;/td&gt;&lt;td style=&quot;color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;font-weight: bold; text-decoration: none;&quot;&gt;[[Category:Assignment]]&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;+&lt;/td&gt;&lt;td style=&quot;color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;font-weight: bold; text-decoration: none;&quot;&gt;[[Category:Group Projects]]&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/table&gt;</summary>
		<author><name>Lenaolufson</name></author>	</entry>

<tr><td colspan="2" class="diff-lineno" id="L57" ><!--LINE 57--></td>
<td colspan="2" class="diff-lineno"><!--LINE 57--></td></tr>
<tr><td class='diff-marker'>&#160;</td><td class='diff-context'><div>* I went to my new worksheet and clicked on the B1 cell.&#160; I selected &quot;Paste Special&quot; from the Edit menu.&#160; A window opened: I clicked on the radio button for &quot;Values&quot; and clicked OK.&#160; This pasted the numerical result into my new worksheet instead of the equation which must have made calculations on the fly.</div></td><td class='diff-marker'>&#160;</td><td class='diff-context'><div>* I went to my new worksheet and clicked on the B1 cell.&#160; I selected &quot;Paste Special&quot; from the Edit menu.&#160; A window opened: I clicked on the radio button for &quot;Values&quot; and clicked OK.&#160; This pasted the numerical result into my new worksheet instead of the equation which must have made calculations on the fly.</div></td></tr>
<tr><td class='diff-marker'>&#160;</td><td class='diff-context'><div>* I deleted Rows 2 and 3 where it said &quot;Average&quot; and &quot;StDev&quot; so that my data rows with gene IDs were immediately below the header row 1.</div></td><td class='diff-marker'>&#160;</td><td class='diff-context'><div>* I deleted Rows 2 and 3 where it said &quot;Average&quot; and &quot;StDev&quot; so that my data rows with gene IDs were immediately below the header row 1.</div></td></tr>
<tr><td class='diff-marker'>−</td><td class='diff-deletedline'><div>* I went to a new column on the right of my worksheet.&#160; I typed the header &quot;<del class="diffchange diffchange-inline">Avg_LogFC_A</del>&quot;, &quot;<del class="diffchange diffchange-inline">Avg_LogFC_B</del>&quot;, and &quot;<del class="diffchange diffchange-inline">Avg_LogFC_C</del>&quot; into the top cell of the next three columns.</div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div>* I went to a new column on the right of my worksheet.&#160; I typed the header &quot;<ins class="diffchange diffchange-inline">Avg_SampleA</ins>&quot;, &quot;<ins class="diffchange diffchange-inline">Avg_SampleB</ins>&quot;, and &quot;<ins class="diffchange diffchange-inline">Avg_SampleC</ins>&quot;<ins class="diffchange diffchange-inline">, etc. </ins>into the top cell of the next three columns.</div></td></tr>
<tr><td class='diff-marker'>&#160;</td><td class='diff-context'><div>* I computed the average log fold change for the replicates for each patient by typing the equation:</div></td><td class='diff-marker'>&#160;</td><td class='diff-context'><div>* I computed the average log fold change for the replicates for each patient by typing the equation:</div></td></tr>
Exception encountered, of type &quot;Error&quot;<br />
[71a32819] /biodb/fall2015/index.php?action=history&amp;feed=atom&amp;title=Lenaolufson_Week_14   Error from line 434 of /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php: Call to undefined function each()<br />
Backtrace:<br />
#0 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(544): DiffEngine-&gt;diag()<br />
#1 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(344): DiffEngine-&gt;compareSeq()<br />
#2 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(227): DiffEngine-&gt;diffLocal()<br />
#3 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(721): DiffEngine-&gt;diff()<br />
#4 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(859): Diff-&gt;__construct()<br />
#5 /apps/xmlpipedb/biodb/fall2015/includes/diff/DairikiDiff.php(980): MappedDiff-&gt;__construct()<br />
#6 /apps/xmlpipedb/biodb/fall2015/includes/diff/TableDiffFormatter.php(194): WordLevelDiff-&gt;__construct()<br />
#7 /apps/xmlpipedb/biodb/fall2015/includes/diff/DiffFormatter.php(140): TableDiffFormatter-&gt;changed()<br />
#8 /apps/xmlpipedb/biodb/fall2015/includes/diff/DiffFormatter.php(82): DiffFormatter-&gt;block()<br />
#9 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(888): DiffFormatter-&gt;format()<br />
#10 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(802): DifferenceEngine-&gt;generateTextDiffBody()<br />
#11 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(733): DifferenceEngine-&gt;generateContentDiffBody()<br />
#12 /apps/xmlpipedb/biodb/fall2015/includes/diff/DifferenceEngine.php(662): DifferenceEngine-&gt;getDiffBody()<br />
#13 /apps/xmlpipedb/biodb/fall2015/includes/FeedUtils.php(155): DifferenceEngine-&gt;getDiff()<br />
#14 /apps/xmlpipedb/biodb/fall2015/includes/actions/HistoryAction.php(325): FeedUtils::formatDiffRow()<br />
#15 /apps/xmlpipedb/biodb/fall2015/includes/actions/HistoryAction.php(290): HistoryAction-&gt;feedItem()<br />
#16 /apps/xmlpipedb/biodb/fall2015/includes/actions/HistoryAction.php(130): HistoryAction-&gt;feed()<br />
#17 /apps/xmlpipedb/biodb/fall2015/includes/actions/FormlessAction.php(43): HistoryAction-&gt;onView()<br />
#18 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(395): FormlessAction-&gt;show()<br />
#19 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(273): MediaWiki-&gt;performAction()<br />
#20 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(566): MediaWiki-&gt;performRequest()<br />
#21 /apps/xmlpipedb/biodb/fall2015/includes/MediaWiki.php(414): MediaWiki-&gt;main()<br />
#22 /apps/xmlpipedb/biodb/fall2015/index.php(44): MediaWiki-&gt;run()<br />
#23 {main}<br />

